PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1150591g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HD-ZIP
Protein Properties Length: 218aa    MW: 24477.9 Da    PI: 10.0747
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1150591g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.89.3e-1974128256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ ++tk+q   Le+ F+++++++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  PDK_30s1150591g001  74 RKKLRLTKDQSALLEDRFKEQSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTK 128
                         788899***********************************************98 PP
2HD-ZIP_I/II121.34.9e-3974164192
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rl+k+q++lLE+ F+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E d+e+Lkr++++l++en+rL+ke +eLr +l
  PDK_30s1150591g001  74 RKKLRLTKDQSALLEDRFKEQSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEFDCEVLKRCCETLSDENRRLKKELHELR-AL 163
                         69*************************************************************************************9.66 PP

         HD-ZIP_I/II  92 k 92 
                         k
  PDK_30s1150591g001 164 K 164
                         5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.28170130IPR001356Homeobox domain
SuperFamilySSF466895.43E-1870131IPR009057Homeodomain-like
SMARTSM003893.1E-1572134IPR001356Homeobox domain
CDDcd000863.78E-1574131No hitNo description
PfamPF000464.5E-1674128IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-1774128IPR009057Homeodomain-like
PROSITE patternPS000270105128IPR017970Homeobox, conserved site
SMARTSM003402.2E-21130173IPR003106Leucine zipper, homeobox-associated
PfamPF021833.4E-10130164IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MVSLEPSLTL GLPDDAKKAK VEARVARQSS PHSTVSSFSD GHPSSTKKEN SIRSEEAEKV  60
SFRVSDEEEE GSARKKLRLT KDQSALLEDR FKEQSTLNPK QKQALAKQLN LRPRQVEVWF  120
QNRRARTKLK QTEFDCEVLK RCCETLSDEN RRLKKELHEL RALKSASPLY MQFPAAALTM  180
CPSCKKITAA SEGSKAGPFV TAPKPHLFMN SFTHSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122130RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008798887.11e-158homeobox-leucine zipper protein HAT22-like
SwissprotA2XE761e-75HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotQ8GRL41e-75HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLA0A2H3YHI91e-157A0A2H3YHI9_PHODC; homeobox-leucine zipper protein HAT22-like
STRINGXP_008798887.11e-157(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-71HD-ZIP family protein