PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1151651g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HSF
Protein Properties Length: 325aa    MW: 36010.8 Da    PI: 7.2987
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1151651g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.13.3e-34181102103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         F+ k+y++++d++++ li+w + +nsf+vld+ +f++ +Lp+yFkhsnf+SFvRQLn+YgFkkv+ ++         weF+h+sF +g+++
  PDK_30s1151651g002  18 FVAKTYQMVNDPRTDALIRWGKGSNSFLVLDPADFSHLLLPSYFKHSNFSSFVRQLNTYGFKKVDPDR---------WEFAHESFLRGRTH 99 
                         9****************************************************************999.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll +i r++++
  PDK_30s1151651g002 100 LLPSIVRRNKR 110
                         *******9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.2E-378101IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.22E-3314107IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.7E-5114107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-171841IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.9E-3018107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-175668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-176981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEGKSSSNME YQIQAAPFVA KTYQMVNDPR TDALIRWGKG SNSFLVLDPA DFSHLLLPSY  60
FKHSNFSSFV RQLNTYGFKK VDPDRWEFAH ESFLRGRTHL LPSIVRRNKR KDGGSSSGDK  120
KDGIEGEEEE AERLMKELGK LRREQRGLQE ELQGMSERLQ ATERRPNQMI SFLVKVSEDP  180
DFLPRLILSK KQQLQSEKKQ RLVAPPTPPS FSSPPSLMPS GVSLHLDVGS AAEETNFCHL  240
EHRAGPLTLE AEKTLPMVSN TSVDTGFDGG VSANISVPQM NVAGADAVIS GSQMRLLPEV  300
GVAETSSTAK TSVPFPFSLL GHGFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-231810720120Heat shock factor protein 1
5d5u_B6e-231810729129Heat shock factor protein 1
5d5v_B6e-231810729129Heat shock factor protein 1
5d5v_D6e-231810729129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008810034.10.0heat stress transcription factor C-1b-like
SwissprotQ6VBA41e-71HFC1A_ORYSJ; Heat stress transcription factor C-1a
SwissprotQ942D61e-72HFC1B_ORYSJ; Heat stress transcription factor C-1b
TrEMBLA0A2H3Z8J00.0A0A2H3Z8J0_PHODC; heat stress transcription factor C-1b-like
STRINGXP_008810034.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112983141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.19e-64heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Schmidt R, et al.
    Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica.
    AoB Plants, 2012. 2012: p. pls011
    [PMID:22616023]