PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1158611g004

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

HD-ZIP

Protein Properties

Length: 249aa MW: 28391.4 Da PI: 5.1287

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1158611g004	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.6	2.2e-18	32	86	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ +++ +LA++lgL+ rqV +WFqNrRa++k PDK_30s1158611g004 32 EKKRRLSVYQVKALEKNFEVENKLEPDRKVRLARELGLQPRQVAIWFQNRRARWK 86 677899************************************************9 PP
2	HD-ZIP_I/II	127.8	4.4e-41	32	123	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrls qvk+LE++Fe e+kLep+rKv+lareLglqprqva+WFqnrRAR+ktkqlE+dy+aLk +y+al+ + ++L++++e+L +e+ PDK_30s1158611g004 32 EKKRRLSVYQVKALEKNFEVENKLEPDRKVRLARELGLQPRQVAIWFQNRRARWKTKQLERDYAALKGSYEALRLDFHSLHRDKEALLAEM 122 69*************************************************************************************9998 PP HD-ZIP_I/II 92 k 92 k PDK_30s1158611g004 123 K 123 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.07E-20	19	90	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.7E-20	25	88	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.896	28	88	IPR001356	Homeobox domain
Pfam	PF00046	1.1E-15	31	86	IPR001356	Homeobox domain
SMART	SM00389	4.9E-17	31	92	IPR001356	Homeobox domain
CDD	cd00086	6.17E-17	31	89	No hit	No description
PRINTS	PR00031	9.4E-6	59	68	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	63	86	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.4E-6	68	84	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.1E-14	88	129	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009637	Biological Process	response to blue light
GO:0030308	Biological Process	negative regulation of cell growth
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0048573	Biological Process	photoperiodism, flowering
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MYERGFQPII DGLDEEECGD GEMCSSAGSG REKKRRLSVY QVKALEKNFE VENKLEPDRK 60 VRLARELGLQ PRQVAIWFQN RRARWKTKQL ERDYAALKGS YEALRLDFHS LHRDKEALLA 120 EMKMLKDKLA EEESASFSSV KEEPLTGRSS DSDSSAVLND ENSPHDHRRM SSSTASGMFS 180 AAIGFENSTS FPCSPPSLLN SDSRQQKGFQ HQLLKTEDDE FLSGEEPCSS FFSDDHAATL 240 SWYYSEHWT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	88	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00051	PBM	Transfer from AT4G40060	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated in leaves by drought stress. {ECO:0000269\|PubMed:17999151}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT036856	2e-37	BT036856.2 Zea mays full-length cDNA clone ZM_BFb0143M01 mRNA, complete cds.
GenBank	BT054500	2e-37	BT054500.1 Zea mays full-length cDNA clone ZM_BFc0103D23 mRNA, complete cds.
GenBank	JX469932	2e-37	JX469932.1 Zea mays subsp. mays clone UT3191 HB-type transcription factor mRNA, partial cds.
GenBank	JX514832	2e-37	JX514832.1 Zea mays cultivar B73 homeodomain leucine zipper protein 10 (hdz10) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026660788.1	1e-174	homeobox-leucine zipper protein HOX20-like isoform X2
Swissprot	A2YWC0	5e-64	HOX20_ORYSI; Homeobox-leucine zipper protein HOX20
Swissprot	Q6Z248	5e-64	HOX20_ORYSJ; Homeobox-leucine zipper protein HOX20
TrEMBL	A0A3Q0I1M1	1e-173	A0A3Q0I1M1_PHODC; homeobox-leucine zipper protein HOX20-like isoform X2
STRING	XP_008790926.1	1e-174	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3009	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	4e-58	homeobox protein 16

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]