PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1161861g003

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

ERF

Protein Properties

Length: 362aa MW: 38657.4 Da PI: 6.3658

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1161861g003	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.9	1.1e-17	63	111	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdp++ + r++lg+f+ta+eAa a+++a+++++g PDK_30s1161861g003 63 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 111 56****.******965...5**********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	20.613	62	119	IPR001471	AP2/ERF domain
SMART	SM00380	1.0E-31	62	125	IPR001471	AP2/ERF domain
CDD	cd00018	3.69E-28	62	118	No hit	No description
SuperFamily	SSF54171	6.47E-20	63	119	IPR016177	DNA-binding domain
PRINTS	PR00367	1.4E-7	63	74	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	8.9E-28	63	118	IPR001471	AP2/ERF domain
Pfam	PF00847	4.3E-11	65	111	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.4E-7	85	101	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MSSSKSLDTA APKAQGHNPP SVGFCQAKPS HSPSSSSSSS PPTTASSPPE RRGRRKPAEP 60 GRFLGVRRRP WGRYAAEIRD PTTKERHWLG TFDTAQEAAL AYDRAALSMK GTQARTNFIY 120 TDTPISTFHS LLTPYHSQNF TPPPMPPPPT QPHHLIGTAS MQTTNQNIPS QSQMSHFAFQ 180 SSGDNSTSPA FGSSVETGIG NNFLFSDDSR SGYLSSIIPE SCLRSSPKHS PPGQDNIISC 240 ELNAPILSPR NQVQSHGSTS ASSSYSATNG ALFDAHSGGV GAMSSEDFPC FTEMNSGFWV 300 DEPLWELNAC EFPTSTATSM GDLGTSSMQG PACGSLPQVS DSYSPSTSSL TDVFDLGYSF 360 EH

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MSSSKSLDTA APKAQGHNPP SVGFCQAKPS HSPSSSSSSS PPTTASSPPE RRGRRKPAEP  60
GRFLGVRRRP WGRYAAEIRD PTTKERHWLG TFDTAQEAAL AYDRAALSMK GTQARTNFIY  120
TDTPISTFHS LLTPYHSQNF TPPPMPPPPT QPHHLIGTAS MQTTNQNIPS QSQMSHFAFQ  180
SSGDNSTSPA FGSSVETGIG NNFLFSDDSR SGYLSSIIPE SCLRSSPKHS PPGQDNIISC  240
ELNAPILSPR NQVQSHGSTS ASSSYSATNG ALFDAHSGGV GAMSSEDFPC FTEMNSGFWV  300
DEPLWELNAC EFPTSTATSM GDLGTSSMQG PACGSLPQVS DSYSPSTSSL TDVFDLGYSF  360
EH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-20	53	118	5	71	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the control of cell division patterns during the early lateral root primordium development. Acts downstream of auxin signaling (PubMed:17630277). Regulated by ARF7 and ARF19 in response to auxin. Co-acts with LBD16 and LBD18 to control lateral root development (PubMed:23749813). Involved in the determination of floral meristem identity and suppression of bract growth. Required for proper conversion of secondary inflorescences to flowers. Acts together with NPR5/BOP2 and NPR6/BOP1 to promote expression of LFY and AP1, two central regulators of floral meristem identity (PubMed:19482972). {ECO:0000250\|UniProtKB:Q9LND1, ECO:0000269\|PubMed:17630277, ECO:0000269\|PubMed:19482972, ECO:0000269\|PubMed:23749813}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:17630277, ECO:0000269\|PubMed:23749813}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008796243.1	0.0	ethylene-responsive transcription factor FZP-like
Swissprot	Q6J9Q2	1e-47	ERF86_ARATH; Ethylene-responsive transcription factor ERF086
TrEMBL	A0A2H3YBA6	0.0	A0A2H3YBA6_PHODC; ethylene-responsive transcription factor FZP-like
STRING	XP_008796243.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10525	28	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18560.1	1e-47	ERF family protein

Publications ? help Back to Top
Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Chandler JW,Werr W DORNRÖSCHEN, DORNRÖSCHEN-LIKE, and PUCHI redundantly control floral meristem identity and organ initiation in Arabidopsis. J. Exp. Bot., 2017. 68(13): p. 3457-3472 [PMID:28859377] Chandler JW Class VIIIb APETALA2 Ethylene Response Factors in Plant Development. Trends Plant Sci., 2018. 23(2): p. 151-162 [PMID:29074232]