PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1164261g008
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NF-YA
Protein Properties Length: 259aa    MW: 28600.8 Da    PI: 7.0987
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1164261g008genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA53.76.7e-17100134136
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrk 36 
                         +ep+YVNaKQy++Il+RRq+Rak+e+e+kl +ksrk
  PDK_30s1164261g008 100 EEPVYVNAKQYHGILRRRQSRAKAESENKL-IKSRK 134
                         69****************************.99988 PP
2CBFB_NFYA41.64.1e-131802053358
           CBFB_NFYA  33 ksrkpylheSRhkhAlrRpRgsgGrF 58 
                         ++ +pylheSRh hAl+R+Rg+gGrF
  PDK_30s1164261g008 180 ENSQPYLHESRHLHALKRARGCGGRF 205
                         5689*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.2E-2298208IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115229.39699208IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.7E-26101205IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860104124IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MAFDQMTDNS GPYEQQKPAQ PEIQHEAPST GNFQPGMATP VGYMMPPGHL ETGHAVAQIA  60
YPYVDPYYGG GFAAFGQTVF HPQMMGMQHP GVPLPTEAVE EPVYVNAKQY HGILRRRQSR  120
AKAESENKLI KSRKVSSCCA GTNYHIICQY GTIPSQQLTC TSTGTRILNH SLRSLVPFYE  180
NSQPYLHESR HLHALKRARG CGGRFLNSKS EGNQQNSNSK FEDNQENGQI AAVSDDKEKP  240
ISLLNSDKSS LDNEPEATS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008778422.11e-142nuclear transcription factor Y subunit A-7-like isoform X3
TrEMBLA0A2H3X5031e-140A0A2H3X503_PHODC; nuclear transcription factor Y subunit A-7-like isoform X3
STRINGXP_008778418.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65553853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.23e-45nuclear factor Y, subunit A7