PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1165641g010
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 985aa    MW: 112092 Da    PI: 6.6853
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1165641g010genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM70.15.8e-2271681127
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..............................kvkaeekewyfF 61 
                         lppGfrF Ptdeelv +yL++k+ g++l+  + ++e d+y+ +P+                                  + k+++++++fF
  PDK_30s1165641g010   7 LPPGFRFVPTDEELVIYYLRAKLLGQDLPS-TDVQEEDLYERDPEVYGLfllffitcdihilgllefsmliieiklntgRSKNKKDSVFFF 96 
                         79*************************999.559**********98763478899****************99988766555566688*** PP

                 NAM  62 skrdkkyatgkrknratksgyWkatgk.dkevlsk.........kgelvglkktLvfykgrapkgektdWvmheyr 127
                         ++r+++   +  ++r++ +  Wk + +   +v+++         ++e +gl++tL++++g+    ekt+W mhey 
  PDK_30s1165641g010  97 TQRNRRCGLKYWRKRKVGAKSWKYSDQpFVDVTTQmpatdirhsGREIIGLRRTLIYFNGE----EKTNWRMHEYI 168
                         ********9999999999999**8766334455546666666667777**********543....489*******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.22E-12450IPR003441NAC domain
PROSITE profilePS5100526.0247194IPR003441NAC domain
PfamPF023653.8E-178168IPR003441NAC domain
SuperFamilySSF1019413.01E-1285192IPR003441NAC domain
PROSITE profilePS513756.665423457IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.842496530IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.87531561IPR002885Pentatricopeptide repeat
PfamPF015350.039536556IPR002885Pentatricopeptide repeat
PfamPF130416.5E-9561609IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.161562596IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.6E-6565597IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.857597632IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.1E-5600632IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.75633663IPR002885Pentatricopeptide repeat
PfamPF015350.012636661IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.349665695IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.982699733IPR002885Pentatricopeptide repeat
PfamPF144324.1E-38735859IPR032867DYW domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 985 aa     Download sequence    Send to blast
MAANLELPPG FRFVPTDEEL VIYYLRAKLL GQDLPSTDVQ EEDLYERDPE VYGLFLLFFI  60
TCDIHILGLL EFSMLIIEIK LNTGRSKNKK DSVFFFTQRN RRCGLKYWRK RKVGAKSWKY  120
SDQPFVDVTT QMPATDIRHS GREIIGLRRT LIYFNGEEKT NWRMHEYIIP LGPMLDSLAH  180
LKSDTWVLCK TFCDVEESDD PEDEQSYEEE SENSEDELPH NEEPNLSVES AEHPPPVLNL  240
PDVHHRIHWP AGITSSQDPV ADMCMGATKD SGFGNLNNLQ HEEFLKAELE SFRVLPRTGT  300
EWIFDLLACY NHECICNAKM WNGANLELGS VNFELNSSYR QGPLFAPTGP CSRFTASRKL  360
LRSEIKQMPE DPNLFASTIM QYFCLKNFIR TSAVKACSHP PWHPYGLALH AHLIKCLGGA  420
AVDPFVRAAL LSFYSKCGKL AICRHLFDQI SQPDLPTWNC ILAAYARCPS DAESNGSGME  480
TLFLFQRLQL SSTRTNEISL VALISACGDL GALSQGLWAH AYVERNDLVV NFFVATALID  540
MYSKCGRLDL AEQVFAGLPE KDTHCYNAMI RGLAIHGHGR HVIGLFDRMR SEGVAVDDVT  600
LVVMMSACAH AGLVDEGRRC FDRMQMDFGI VPKIEHYGCL LDLLGRAGQL EEAEEVMWQM  660
PMKPNAVMYR TLLVACRIHN KSEMGERMIE NLMQLEPEHG GNYVLLSNMY ADADRWDDVR  720
RVRKVMKDKG IDKNPGSSLV EIDGAMHEFL MGDKTHPHSK EIYSMLDEMD KKLHECGHRP  780
STKEVLFDVE EEDKEDALSY HSERLAIAFS LLASGSSAPI RVIKNLRVCG DCHSATKLIS  840
WIYRREIIMR DRNRFHHFKD GGAVFSSQKE KAQCFTRQHY VQPGGLVNFL RTLIPQEAEK  900
CKSISPSARD IFYIQAWLNL LDQRTLTWRI ICYLPKAKFV GPMRIAGKLV NIKLHARRSQ  960
RLVQRSRSLY TCECRPGNIT GSLIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D4e-4136767732332PLS9-PPR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100110RRCGLKYWRKR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.13e-17NAC domain containing protein 32