PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1166341g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 325aa    MW: 36099.8 Da    PI: 7.1013
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1166341g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.36.4e-14123174155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ +r+l+P++   ++++ + a+i   A++Y+k+L+
  PDK_30s1166341g001 123 QRMTHIAVERNRRKQMNEYLSVIRSLMPPS---YAQRGDQASIIGGAINYVKELE 174
                         79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.83E-14121178No hitNo description
Gene3DG3DSA:4.10.280.101.1E-13121178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-17122189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.707122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-11123174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-9128179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MALDAVVFPQ DPFGCTMKEF YAMGGGGAWS YGFGGREGKG VVLECKMDGG VGGGVRQDQG  60
RGVVDGVHGN WDSSCSSLMQ NLEEWHVNSS PPSETGAQEM AVRGRRKRRR TRSFKNKEEV  120
ENQRMTHIAV ERNRRKQMNE YLSVIRSLMP PSYAQRGDQA SIIGGAINYV KELEQLLQSL  180
EVQKRLKQRS DTVPFADFFT FPQYSSCSSQ SGNSTATAAA ANTNTPEMMA ENRSAIADIE  240
VMMVDSHANL KVLSRRRPKQ LLKLVVGLQN LQLTTLHLNV TTIDQMVLYS FSLKVEDDCQ  300
YTSVDEIATA VHQMVGKIQE ESDLN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105109RKRRR
2105110RKRRRT
3123134RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939706.10.0transcription factor bHLH94
SwissprotQ9C7T41e-81BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2H3X1M11e-145A0A2H3X1M1_PHODC; transcription factor bHLH96-like
STRINGXP_008776945.11e-169(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-58bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]