PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1171781g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 241aa    MW: 27151.8 Da    PI: 9.5865
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1171781g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.72.4e-49141381128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeelvv+yLk+kv + +l++ ++i+e+d+ k++Pwd+p +    ++e yfF+ r+ ky++g+r+nrat  gyWkatgkdk+
  PDK_30s1171781g002  14 LPPGFRFHPTDEELVVQYLKRKVFSCPLPA-SIIPEIDLGKYNPWDFPGA---CKQERYFFHLREAKYRNGNRSNRATGCGYWKATGKDKA 100
                         79****************************.89***************44...45799********************************* PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++++ ++++vg+kk+Lvfy+g+ p+g++tdW+mheyrl
  PDK_30s1171781g002 101 IVASsSNQVVGMKKVLVFYHGKPPRGSRTDWIMHEYRL 138
                         *99867788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-587173IPR003441NAC domain
PROSITE profilePS5100555.67814173IPR003441NAC domain
PfamPF023657.5E-2715138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDKPSFMRQG VLRLPPGFRF HPTDEELVVQ YLKRKVFSCP LPASIIPEID LGKYNPWDFP  60
GACKQERYFF HLREAKYRNG NRSNRATGCG YWKATGKDKA IVASSSNQVV GMKKVLVFYH  120
GKPPRGSRTD WIMHEYRLAG AETRACVFPQ RKNSTLSSMV PTKDWVLCRI FKKKRATKMD  180
VDVEECHEES QSRNGSIGFV DFMGLQQRDQ RPSSASSSES SCVTEPSDGS SSGDATSCSN  240
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-511217815170NO APICAL MERISTEM PROTEIN
1ut4_B4e-511217815170NO APICAL MERISTEM PROTEIN
1ut7_A4e-511217815170NO APICAL MERISTEM PROTEIN
1ut7_B4e-511217815170NO APICAL MERISTEM PROTEIN
3swm_A5e-511217818173NAC domain-containing protein 19
3swm_B5e-511217818173NAC domain-containing protein 19
3swm_C5e-511217818173NAC domain-containing protein 19
3swm_D5e-511217818173NAC domain-containing protein 19
3swp_A5e-511217818173NAC domain-containing protein 19
3swp_B5e-511217818173NAC domain-containing protein 19
3swp_C5e-511217818173NAC domain-containing protein 19
3swp_D5e-511217818173NAC domain-containing protein 19
4dul_A4e-511217815170NAC domain-containing protein 19
4dul_B4e-511217815170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008791093.10.0NAC domain-containing protein 83-like
SwissprotQ9FY933e-80NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A2H3XZG00.0A0A2H3XZG0_PHODC; NAC domain-containing protein 83-like
STRINGXP_008791093.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63173254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.14e-82NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]