PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1173791g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family SBP
Protein Properties Length: 241aa    MW: 26077.3 Da    PI: 8.7484
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1173791g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP28.25.1e-09151171222
                         -SSTT-----TT--HHHHHTT CS
                 SBP   2 CqvegCeadlseakeyhrrhk 22 
                         CqvegC adls++k+yhrrhk
  PDK_30s1173791g001 151 CQVEGCGADLSNTKDYHRRHK 171
                         ********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.0E-8144171IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.54E-8150180IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
METKVGGKRQ QFYGAGTSSG LGKKSLEWDV NGRKWDGNHC VATPLNSVSE DCRNKQLMSD  60
PATGGLSNSS SSCAEETDLG ITGKGKAELE KRRRITVADD DDDDDEPSDG SLTLKLGGHA  120
SELVEADLAN WEGKNGNRSK LAKGNSSRSS CQVEGCGADL SNTKDYHRRH KHHGPLLVVK  180
PKSSMLIQLC FIQGCLLEKW QKLKWPAHFS YLGASPSKVA KVGRKKSQFL LTCISPVTSG  240
N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19094KRRRI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008790477.11e-112squamosa promoter-binding-like protein 6
TrEMBLA0A2H3XYJ51e-111A0A2H3XYJ5_PHODC; squamosa promoter-binding-like protein 6
STRINGXP_008790476.11e-111(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.12e-19squamosa promoter-binding protein-like 12