PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1179501g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

G2-like

Protein Properties

Length: 257aa MW: 29693.6 Da PI: 7.5855

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1179501g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.2	1.6e-32	19	72	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+a+e+LGG++kAtPk +l+lm+v gLt++hvkSHLQ+YR+ PDK_30s1179501g001 19 PRLRWTPDLHHCFVRAIERLGGQDKATPKLVLQLMDVRGLTISHVKSHLQMYRS 72 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-31	15	75	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.569	15	75	IPR017930	Myb domain
SuperFamily	SSF46689	1.34E-15	17	75	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.1E-24	19	72	IPR006447	Myb domain, plants
Pfam	PF00249	1.8E-8	20	71	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MGSCGRNGAV RQYIRSKVPR LRWTPDLHHC FVRAIERLGG QDKATPKLVL QLMDVRGLTI 60 SHVKSHLQMY RSMRNDIGKQ GLQQTQERRH SCEHTDGGAD ELNDDTLLSS LKPQKEFQPQ 120 FMFSPLPMKR NQMETHAISN GETLATQYSF DDYLQTVAAE RGIKENLRWH KDATETGFLA 180 GDQLSKHKAQ WQMEAEPETF EVFKLEDQLL MPNNNRKRKK SKENYEDRCR SYVPPSFCDD 240 HGVKNEEVDD CLLATIL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-18	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	215	219	RKRKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008812783.1	0.0	putative Myb family transcription factor At1g14600
TrEMBL	A0A2H3ZF13	0.0	A0A2H3ZF13_PHODC; putative Myb family transcription factor At1g14600
STRING	XP_008812783.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2966	35	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	8e-33	G2-like family protein