PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1179691g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

LBD

Protein Properties

Length: 231aa MW: 24999.9 Da PI: 10.0951

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1179691g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	101.9	5.8e-32	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++q PDK_30s1179691g002 4 SCNGCRVLRKGCSENCSIRPCLqwikkPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQ 94 6**************************************************************************************** PP DUF260 87 leqlkaelallke 99 l+q+++e++l ++ PDK_30s1179691g002 95 LCQAAVEAVLKGA 107 *****998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.059	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.1E-25	4	103	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKK PESQANATVF LAKFYGRAGL MNLINAGPEH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGAPIM QIPSETAAST 120 PVPPLKAYDI RHVSKDSDDA AATRAAAELH KISKSRTRFK RVAAAKPKHG ATAEGSHVSQ 180 GEPNVAEESE VGLELTLGFE PVSRAGRTTR PAAEARIEMA KTRRLTVLAS F

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008799243.1	1e-118	LOB domain-containing protein 41
Swissprot	Q9M886	3e-92	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A2H3YIS0	1e-116	A0A2H3YIS0_PHODC; LOB domain-containing protein 41
STRING	XP_008799243.1	1e-117	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	6e-92	LOB domain-containing protein 41