PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1179991g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family AP2
Protein Properties Length: 131aa    MW: 15128.3 Da    PI: 10.3442
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1179991g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.57.8e-141167155
                 AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                        s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  PDK_30s1179991g004 11 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 67
                        57*******************6666777775555599******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-161177IPR016177DNA-binding domain
PfamPF008471.7E-91167IPR001471AP2/ERF domain
SMARTSM003802.1E-181281IPR001471AP2/ERF domain
PROSITE profilePS5103218.4131275IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.3E-131276IPR001471AP2/ERF domain
PRINTSPR003675.9E-61324IPR001471AP2/ERF domain
PRINTSPR003675.9E-65777IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MPPCAAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQGAYDD EEAAARAYDL  60
AALKYWGAGT LINFPVSDYA RDLEEMQMVS KEEYLVSLRR KSSAFSRGFP KYRGLSRLIG  120
PLWKKLMVVF T
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010927010.16e-79AP2-like ethylene-responsive transcription factor At2g41710 isoform X2
SwissprotQ8GWK23e-60AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A2H3YR908e-69A0A2H3YR90_PHODC; AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
TrEMBLJ3M6S06e-69J3M6S0_ORYBR; Uncharacterized protein
STRINGXP_008802631.11e-69(Phoenix dactylifera)
STRINGOB05G22940.11e-69(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92003136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-57AP2 family protein