PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1180111g006
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 437aa    MW: 48433 Da    PI: 6.2934
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1180111g006genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.3e-08369416448
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                         WT  E  +lv++v ++G g+W+ I r +      Rt  ++k++w+++l
  PDK_30s1180111g006 369 WTLSEVMKLVEGVSRYGVGRWTEIKRLLFsssAYRTSVDLKDKWRNLL 416
                         ********************************99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.621361420IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.5E-12362418IPR009057Homeodomain-like
SuperFamilySSF466892.02E-15363417IPR009057Homeodomain-like
SMARTSM007177.9E-10365418IPR001005SANT/Myb domain
CDDcd116605.17E-20369417No hitNo description
PfamPF002491.7E-6369416IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MMQGIEEEGI LHLPYSLSSV CPDLSDIGFP ESSEMDYASE NMSFMRNFGS ECQTISIERE  60
EDAGEMSHLP NAIIPCEGTS DCAPSFLDNM STDELHDAFR SMFGRDTCVM DKQWLKHRVL  120
FGLQNHTEVG YASSLLECGL SSVENDDDMI WIPKNVPEEI CIPLTNIFGS SALVVGTGAG  180
KERHSCEDVA VANISKVGKA GFEPLNLEER PSALTATKRL RKPTRRYIEE TSEMISRGCN  240
ERAKAPIDNA PIVSSRDKLS HVKTDNRGGQ VVYQEYSPRS GIQVTCFISL FRVSAIAGLA  300
VQKSKFTSCH CIGSKILGSK EDMIFSVACQ ATCASRLARD ELQDGLSDDC ATATRNEKSG  360
IRRKHHRLWT LSEVMKLVEG VSRYGVGRWT EIKRLLFSSS AYRTSVDLKD KWRNLLRASG  420
AQLHNRNQVG AVVILLI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026663253.10.0uncharacterized protein LOC103714543 isoform X1
RefseqXP_026663254.10.0uncharacterized protein LOC103714543 isoform X1
TrEMBLA0A3Q0I8X50.0A0A3Q0I8X5_PHODC; uncharacterized protein LOC103714543 isoform X1
STRINGXP_008800048.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69663341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-39TRF-like 6