PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1180271g006
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GRAS
Protein Properties Length: 211aa    MW: 23099.6 Da    PI: 10.4325
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1180271g006genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS111.11.4e-34911333140
                GRAS  33 pdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGl 123
                         ++g  + ++a yf+ AL  r+++ +s+ +++  + + s    +e+   ++ f+evsP+lkf+h++aNqaIlea++g +rvH+iDf++++Gl
  PDK_30s1180271g006   9 NTGVGIGKVAGYFVDALCWRIYSPCSSSSSSSVSVAGS---AAEQEILYHHFYEVSPYLKFAHFMANQAILEAFDGYNRVHVIDFNLMHGL 96 
                         5677889****************666665555444444...6777788899**************************************** PP

                GRAS 124 QWpaLlqaLasRpegpp 140
                         QWpaL+qaLa R++g  
  PDK_30s1180271g006  97 QWPALIQALALRAGGRR 113
                         ************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098522.8481211IPR005202Transcription factor GRAS
PfamPF035145.0E-329113IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MRVVLTRVNT GVGIGKVAGY FVDALCWRIY SPCSSSSSSS VSVAGSAAEQ EILYHHFYEV  60
SPYLKFAHFM ANQAILEAFD GYNRVHVIDF NLMHGLQWPA LIQALALRAG GRRQRRACDK  120
ERGENGPPVK ESRALVPQLS RATVLVTGWT SHMRKGIGNL TGGPAILPSF PGWVDQSRLF  180
EIILPSETAA ILRTRLKMSA TRANRPAGSS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-17811534141GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008809331.22e-71DELLA protein RHT-1-like
TrEMBLA0A2H3Z6Z75e-70A0A2H3Z6Z7_PHODC; DELLA protein RHT-1-like
STRINGXP_008809331.14e-71(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.18e-22GRAS family protein