PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1182181g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NF-YA

Protein Properties

Length: 205aa MW: 22421.6 Da PI: 9.8533

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1182181g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	49.8	1.1e-15	160	196	1	38
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpy 38 +ep+YVNaKQy++Il+RRq+Rak+e ek++ +k rk+ PDK_30s1182181g001 160 EEPVYVNAKQYHGILRRRQSRAKAELEKRV-IKVRKRW 196 69***************************9.9999975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	5.6E-7	158	201	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	18.617	159	205	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	8.7E-12	161	196	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	164	184	IPR018362	CCAAT-binding factor, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010262	Biological Process	somatic embryogenesis
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0055046	Biological Process	microgametogenesis
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MESRAKDTNA VEANGQSALP STINPQPWWR GPGFGVILPA VLSDSAPKST SVNLPLGGAG 60 NKGGQAQSHD GADGMGDVSN ERQNVGTQRV ISPVGFMSMF IPVSVAISTT TIPYSACAAY 120 SYSDPYFAGI MAPYGTQALV HPQMLGMPHT RMPLPLEMTE EPVYVNAKQY HGILRRRQSR 180 AKAELEKRVI KVRKRWRYYL QGHEF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008777829.1	1e-118	nuclear transcription factor Y subunit A-1-like isoform X1
Refseq	XP_017696209.1	1e-118	nuclear transcription factor Y subunit A-1-like isoform X1
Refseq	XP_017696210.1	1e-118	nuclear transcription factor Y subunit A-1-like isoform X1
Refseq	XP_017696211.1	1e-118	nuclear transcription factor Y subunit A-1-like isoform X1
Refseq	XP_026657139.1	1e-118	nuclear transcription factor Y subunit A-1-like isoform X1
Refseq	XP_026657140.1	1e-118	nuclear transcription factor Y subunit A-1-like isoform X1
Refseq	XP_026657141.1	1e-118	nuclear transcription factor Y subunit A-1-like isoform X1
TrEMBL	A0A2H3X3P3	1e-116	A0A2H3X3P3_PHODC; nuclear transcription factor Y subunit A-1-like isoform X1
STRING	XP_008777829.1	1e-117	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8205	36	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12840.4	1e-35	nuclear factor Y, subunit A1