PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1183591g003

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NAC

Protein Properties

Length: 150aa MW: 17731.1 Da PI: 9.4935

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1183591g003	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177	5.1e-55	11	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88 +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi++vd++k+ePwdL+ k ++ + ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+ PDK_30s1183591g003 11 VPPGFRFHPTDEELLYYYLRKKVAYEAIDL-DVIRDVDLNKLEPWDLKdKcRIGSePQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGR 100 69**************************.9***********943444332445**************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 dk+++ ++++ +g++ktLvfy+grap+g+ktdW+mheyrl PDK_30s1183591g003 101 DKTIHLSNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRL 140 ************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.15E-55	7	144	IPR003441	NAC domain
PROSITE profile	PS51005	53.391	11	150	IPR003441	NAC domain
Pfam	PF02365	2.8E-29	12	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MAQPSNRQLT VPPGFRFHPT DEELLYYYLR KKVAYEAIDL DVIRDVDLNK LEPWDLKDKC 60 RIGSEPQNEW YFFSHKDKKY PTGTRTNRAT TAGFWKATGR DKTIHLSNSK RIGMRKTLVF 120 YTGRAPHGQK TDWIMHEYRL DDESMEVQVS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-48	8	144	14	146	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-48	8	144	14	146	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-48	8	144	14	146	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-48	8	144	14	146	NO APICAL MERISTEM PROTEIN
3swm_A	1e-48	8	144	17	149	NAC domain-containing protein 19
3swm_B	1e-48	8	144	17	149	NAC domain-containing protein 19
3swm_C	1e-48	8	144	17	149	NAC domain-containing protein 19
3swm_D	1e-48	8	144	17	149	NAC domain-containing protein 19
3swp_A	1e-48	8	144	17	149	NAC domain-containing protein 19
3swp_B	1e-48	8	144	17	149	NAC domain-containing protein 19
3swp_C	1e-48	8	144	17	149	NAC domain-containing protein 19
3swp_D	1e-48	8	144	17	149	NAC domain-containing protein 19
4dul_A	1e-48	8	144	14	146	NAC domain-containing protein 19
4dul_B	1e-48	8	144	14	146	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in stress response. {ECO:0000250\|UniProtKB:Q7F2L3}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008786536.1	1e-105	protein SOMBRERO-like
Swissprot	Q5Z6B6	2e-92	NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBL	A0A2H3XNU3	1e-104	A0A2H3XNU3_PHODC; protein SOMBRERO-like
STRING	XP_008786536.1	1e-105	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1597	38	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79580.3	7e-82	NAC family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]