PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1185041g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

Protein Properties

Length: 182aa MW: 20272.8 Da PI: 6.4115

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1185041g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	31.2	3.8e-10	123	180	1	53
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyr 53 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++g++W++++i+r PDK_30s1185041g002 123 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHGNEWKFRHIFR 180 99***************************8544444..48*************886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	5.1E-31	108	181	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	4.1E-21	116	181	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.26E-10	122	181	No hit	No description
Pfam	PF02362	1.8E-8	123	180	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MAGSNSNIHV EEKRCLNSEL WHACAGPLVA LPAVGSRVVY FPQGHSEQVA ASTNKEIDSH 60 IPNYPSLPPQ LICQLHNVTM HADVETDEVY AQMTLQPLSP QEQKEPYLPT ELGTPSKQPT 120 NYFCKTLTAS DTSTHGGFSV PRRAAEKVFP PLDFSQQPPA QELIARDLHG NEWKFRHIFR 180 GM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldu_A	2e-79	12	181	47	216	Auxin response factor 5
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010647449.1	1e-120	PREDICTED: auxin response factor 6 isoform X1
Swissprot	A2YG67	1e-111	ARFQ_ORYSI; Auxin response factor 17
Swissprot	Q653U3	1e-111	ARFQ_ORYSJ; Auxin response factor 17
TrEMBL	A0A444CFA9	1e-117	A0A444CFA9_ENSVE; Uncharacterized protein (Fragment)
TrEMBL	A0A445BCC3	1e-117	A0A445BCC3_ARAHY; Uncharacterized protein
STRING	evm.model.supercontig_17.53	1e-118	(Carica papaya)
STRING	XP_008776642.1	1e-116	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2012	36	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30330.1	1e-112	auxin response factor 6

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]