PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1185931g005

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

Dof

Protein Properties

Length: 296aa MW: 31594.2 Da PI: 8.1294

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1185931g005	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125	2.5e-39	42	101	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk++ PDK_30s1185931g005 42 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRK 101 7899*****************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-30	38	100	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-33	44	100	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.199	46	100	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	48	84	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MDTAQWPQEI GLVKPMEELV SSTTGSTTTR PHPMERRARP QKEQALNCPR CNSTNTKFCY 60 YNNYSLTQPR YFCKTCRRYW TEGGSLRNVP VGGGSRKNKR KLPPELSPTP TPISLPTSSQ 120 NPKFHEGQDL NLAFPHHSLQ EFNDFPNLES SSNNNNSRSN SGSIPCTAVG ALSAMDLLRS 180 GMGARGLGPF VPMPMPEYPA GFGVGLQEFR PPTLGFPLDG IGGEGGGHSG GGGGGGGGGY 240 GGLHGVQENA GGRLLFPFED LKSVPSSTAA EFEQNRAQVG DPPGFWNGMM GGGGSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN977016	2e-56	JN977016.1 Molineria latifolia clone CL27 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008790518.1	1e-172	dof zinc finger protein 2-like
Swissprot	B9F1L8	2e-64	DOF2_ORYSJ; Dof zinc finger protein 2
Swissprot	Q9SXG8	2e-64	DOF1_ORYSJ; Dof zinc finger protein 1
TrEMBL	A0A2H3XY51	1e-171	A0A2H3XY51_PHODC; dof zinc finger protein 2-like
STRING	XP_008790518.1	1e-171	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-56	Dof family protein

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]