PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1190441g011
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 177aa    MW: 19641.2 Da    PI: 7.5081
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1190441g011genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.6e-1159106455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++YI+ Lq
  PDK_30s1190441g011  59 SHSLAERARREKISERMKILQDLVPGC----NKVIGKASVLDEIINYIQALQ 106
                         8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-1853123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-1153110No hitNo description
PROSITE profilePS5088816.22155105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-1955124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-959106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-1161111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MDPPSLVSQA PLPEVWQFPK AEASSGICKK TVDQNPPPPE PSKQDYIHVR ARRGQATDSH  60
SLAERARREK ISERMKILQD LVPGCNKVIG KASVLDEIIN YIQALQRQVE FLSMKLEAVN  120
SRLNTGIEGF PAKDFGAQTY DTTSSLAFNT QPAREYGQGS ATEWLHMQVG GAFERVT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0783235e-59KR078323.1 Lindera glauca transcription factor bHLH2 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017699516.11e-115transcription factor BHLH089
SwissprotQ69WS31e-84BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A2H3ZTP11e-114A0A2H3ZTP1_PHODC; transcription factor BHLH089
STRINGXP_008796704.11e-114(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-72BIG PETAL P