PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1202321g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

FAR1

Protein Properties

Length: 229aa MW: 25982.7 Da PI: 6.7176

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1202321g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	81.4	1.6e-25	56	145	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Y +YA++vGF vr++ks +s++++++++r+fvC++eg+++++ + +++r+r +tr gC a+++v +e++gkw+vtkl++eH+H + PDK_30s1202321g002 56 EYYVAYANHVGFGVRMNKSCHSRKDDTVIMRRFVCTREGFHSKRAIYdDGEKKRKRGTTREGCMAMIEVIREDHGKWVVTKLVTEHTHMV 145 69*************************************99987657889999*******************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-23	56	145	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MDLNDNSADP HMSLALDALA VELNNPITSQ LLQLDNSDMV EPIIGMEFDS DEAAKEYYVA 60 YANHVGFGVR MNKSCHSRKD DTVIMRRFVC TREGFHSKRA IYDDGEKKRK RGTTREGCMA 120 MIEVIREDHG KWVVTKLVTE HTHMVALPGK VRPRDDKAII LGNVGLLHGE SSRGFNNLKN 180 FNRGIRVDPF GEGGEAQGLL EYLKRMQSEN PAFFYTMFVY VFMLIQICS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008785345.1	1e-161	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2H3XKW7	1e-159	A0A2H3XKW7_PHODC; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_008785345.1	1e-160	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-28	FAR1-related sequence 5