PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1203181g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

GATA

Protein Properties

Length: 157aa MW: 17578.1 Da PI: 10.4547

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1203181g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	24.8	3e-08	71	87	19	35
GATA 19 nktLCnaCGlyyrkkgl 35 +++LCnaCG++yrk+++ PDK_30s1203181g001 71 SRSLCNACGIRYRKRRK 87 578***********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.50.10	1.9E-4	72	87	IPR013088	Zinc finger, NHR/GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MISPASAKPS LRNWGSRFDH LYRDTTIDGY DRMEAFKRYA RRRRRGEEHK KNSAAAVAVA 60 VEAAMGSLDP SRSLCNACGI RYRKRRKAKI NGEDKHRKTT ATNSTAIGTI KGKNGSMMAS 120 LEALMDDGDI VRTYLATGVC GYWEFWLAMA AKENFGF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008787687.1	1e-66	GATA transcription factor 16-like
TrEMBL	A0A2H3XRG1	3e-65	A0A2H3XRG1_PHODC; GATA transcription factor 16-like
STRING	XP_008787687.1	5e-66	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP24968	3	5