PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s654821g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GATA
Protein Properties Length: 115aa    MW: 12745.7 Da    PI: 7.9674
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s654821g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA41.91.4e-134679132
               GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrk 32
                       C  Cg +   Tp++Rrgp+g++tLCnaCG+ + k
  PDK_30s654821g001 46 CLRCGISAkaTPHMRRGPEGPRTLCNACGIAWTK 79
                       5567766667**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.0E-54092IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.76E-104184No hitNo description
Gene3DG3DSA:3.30.50.102.2E-114479IPR013088Zinc finger, NHR/GATA-type
PfamPF003205.0E-114779IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MHMPEPVHDV RGGGSGGDYQ MQYEQEPELE VQPSNGDDGL EGPLRCLRCG ISAKATPHMR  60
RGPEGPRTLC NACGIAWTKL PMYLRSYRLS VITITKLRKF KDLIGIHVDQ ISGLP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008782870.11e-50protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_008782880.11e-50protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_008782887.11e-50protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBLA0A2H3XF413e-49A0A2H3XF41_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A2H3XF652e-49A0A2H3XF65_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X2
STRINGXP_008782870.15e-50(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150391318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.31e-13GATA-type zinc finger protein with TIFY domain