PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s655061g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

C2H2

Protein Properties

Length: 430aa MW: 47443.6 Da PI: 8.9381

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s655061g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19	3.9e-06	26	48	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H PDK_30s655061g002 26 FVCEICGKGFQRDQNLQLHRRGH 48 89*******************88 PP
2	zf-C2H2	12.8	0.00035	102	124	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +++ PDK_30s655061g002 102 WKCEKCSKRYAVQSDWKAHSKVC 124 58*****************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.41E-6	25	48	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.2E-5	26	48	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.012	26	48	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.614	26	48	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	28	48	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.4E-4	89	122	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.41E-6	97	122	No hit	No description
SMART	SM00355	130	102	122	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MATKRCNPEA EVIALSPKTL LATNRFVCEI CGKGFQRDQN LQLHRRGHNL PWKLRQRSTK 60 ERRKRVYVCP EKTCIHHHPS RALGDLTGVK KHFCRKHGEK KWKCEKCSKR YAVQSDWKAH 120 SKVCGTREYR CDCGTLFSRR DSFITHRAFC DALAEEAARV SAASNIDRLA SISNANYHFT 180 GGLMRSNMVQ HFPAICKPAM AERQAGDHAL PGLALWMGQR PQNNQTLSTD GSLSAMHQIG 240 PMSISTLYSD PFASCSNAQQ LDGQLSWIYG NKLASSSSVE LTSTSLPTSL KEADLMSIPS 300 QYSTQHHQQS IPASDKSATA LLQKAAQIGA TSCGPSFFGS LEMKCHNTQV QDGSNKYDGL 360 LDPNHPSIAA NMENSLENIA SDITVSNPYS DMHSARHQMA QKDGTRGGET RDFLGVGVQT 420 LCPSSANGWI

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MATKRCNPEA EVIALSPKTL LATNRFVCEI CGKGFQRDQN LQLHRRGHNL PWKLRQRSTK  60
ERRKRVYVCP EKTCIHHHPS RALGDLTGVK KHFCRKHGEK KWKCEKCSKR YAVQSDWKAH  120
SKVCGTREYR CDCGTLFSRR DSFITHRAFC DALAEEAARV SAASNIDRLA SISNANYHFT  180
GGLMRSNMVQ HFPAICKPAM AERQAGDHAL PGLALWMGQR PQNNQTLSTD GSLSAMHQIG  240
PMSISTLYSD PFASCSNAQQ LDGQLSWIYG NKLASSSSVE LTSTSLPTSL KEADLMSIPS  300
QYSTQHHQQS IPASDKSATA LLQKAAQIGA TSCGPSFFGS LEMKCHNTQV QDGSNKYDGL  360
LDPNHPSIAA NMENSLENIA SDITVSNPYS DMHSARHQMA QKDGTRGGET RDFLGVGVQT  420
LCPSSANGWI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	8e-37	98	165	3	70	Zinc finger protein JACKDAW
5b3h_F	8e-37	98	165	3	70	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269\|PubMed:17785527, ECO:0000269\|PubMed:21935722, ECO:0000269\|PubMed:24821766, ECO:0000269\|PubMed:25829440}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269\|PubMed:21935722}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008798275.1	0.0	zinc finger protein NUTCRACKER-like
Swissprot	Q9ZWA6	1e-127	IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBL	A0A2H3YG31	0.0	A0A2H3YG31_PHODC; zinc finger protein NUTCRACKER-like
STRING	XP_008798275.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.2	1e-119	C2H2 family protein

Publications ? help Back to Top
Muñoz-Strale D,León G Identification of two highly specific pollen promoters using transcriptomic data. Plant Physiol. Biochem., 2014. 83: p. 292-9 [PMID:25208507] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]