PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s65509113g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WRKY
Protein Properties Length: 247aa    MW: 27560.6 Da    PI: 10.16
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s65509113g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.61.6e-10213234122
                          ---SS-EEEEEEE--TT-SS-E CS
                 WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                          ldDgy+WrKYGqK vk++++pr
  PDK_30s65509113g003 213 LDDGYKWRKYGQKIVKNTQHPR 234
                          59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.1E-12198234IPR003657WRKY domain
SuperFamilySSF1182902.75E-9206234IPR003657WRKY domain
PROSITE profilePS5081112.737208234IPR003657WRKY domain
SMARTSM007745.8E-4213246IPR003657WRKY domain
PfamPF031064.9E-7214234IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MSLFELVEDS VVIELNIISI KLKVFAFILK DLHHIPYRRK TGRGRKKDRE MFPPKVSAVL  60
NQGFVEDRMS FCTQISPPPH LSFPPHGIQQ TLGGLNMGGG VASYLKEGLP SIPSQYGVAS  120
SDGGGLGQFG ASSGQRSSNS LWSYDEEEGD LGNKISSAGE DDHKYLKNNS CSSNKNNINN  180
LSVGAIRMKK LKARKKVREP RFCFKTLSEV DVLDDGYKWR KYGQKIVKNT QHPRIEQVLV  240
KLRGLIH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008794985.21e-135probable WRKY transcription factor 13
TrEMBLA0A2H3Y8D21e-133A0A2H3Y8D2_PHODC; probable WRKY transcription factor 13
STRINGXP_008794985.11e-173(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.11e-27WRKY DNA-binding protein 13