PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s6550914g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

C2H2

Protein Properties

Length: 188aa MW: 20347.1 Da PI: 4.6001

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s6550914g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	20	41	1	22
EEETTTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt 22 ++Cp C +sF++ + Hi PDK_30s6550914g002 20 FECPVCARSFPSEADVAAHIDA 41 89*****************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd09212	3.20E-18	58	119	No hit	No description
SuperFamily	SSF143503	3.14E-20	71	153	IPR018997	PUB domain
Pfam	PF09409	8.5E-19	72	145	IPR018997	PUB domain
SMART	SM00580	2.0E-20	72	139	IPR018997	PUB domain

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MEDVKDKMKG LMKKSSVNSF ECPVCARSFP SEADVAAHID ACLTQDAATA PLGNGVVAEH 60 VSTFLSAVSA DGAVEVVLKL LRNVVREPEN EKFRRIRMGN PKIKEAVGEV KGGVELLECL 120 GFELGEEGGE VWATMHVPSE EQLAVVRDAV SFLESWKSED SNPTSAETLG TVVESSDRQK 180 KIDRQVVS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008803480.1	1e-121	plant UBX domain-containing protein 2 isoform X1
Refseq	XP_008803481.1	1e-121	plant UBX domain-containing protein 2 isoform X2
TrEMBL	A0A2H3YT95	1e-120	A0A2H3YT95_PHODC; plant UBX domain-containing protein 2 isoform X2
TrEMBL	A0A2H3YTA3	1e-119	A0A2H3YTA3_PHODC; plant UBX domain-containing protein 2 isoform X1
STRING	XP_008803480.1	1e-120	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6756	3	3