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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PDK_30s65509157g006 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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| Family | bHLH | ||||||||
| Protein Properties | Length: 195aa MW: 21782.9 Da PI: 8.4893 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 16 | 2.1e-05 | 167 | 184 | 2 | 19 |
HHHHHHHHHHHHHHHHHH CS
HLH 2 rrahnerErrRRdriNsa 19
r +h++ E+rRR++iN++
PDK_30s65509157g006 167 RSKHSATEQRRRSKINDS 184
899*************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:4.10.280.10 | 4.6E-5 | 162 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 195 aa Download sequence Send to blast |
MELQGKKAAY DFLSPYNKDS SFPHQDPRPP SQGFFLKTHD FLKPLERADA RRTARATAPS 60 AVWPRWSTFS QAASGRIASA TCRTLSPWPW VGESFGGWAV GSSNQALEKK RLMESASRSS 120 KGFDDDDDDD DEEESSRREG SSSQKELTVK VDGKIRGDND QRSTTPRSKH SATEQRRRSK 180 INDSCFFGDL PCATL |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_019708078.1 | 6e-40 | transcription factor BIM1 isoform X8 | ||||
| STRING | XP_008809668.1 | 2e-36 | (Phoenix dactylifera) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP762 | 37 | 128 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G08130.3 | 2e-09 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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