PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s65509159g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 231aa    MW: 26366.6 Da    PI: 9.9675
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s65509159g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.31.4e-11109150351
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                           +GV++  k+ +W A I++      +k+++lg+ g+ eeAa+++++a+ 
  PDK_30s65509159g002 109 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 150
                          59**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510328.66384164IPR001471AP2/ERF domain
SMARTSM003802.1E-4108165IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-8108153IPR016177DNA-binding domain
PfamPF008478.3E-6109151IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-6111154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MVSIRRRRYL GLCTGKGSVP VELPKPAEKG NAVEYPNQNI KPFSVHPMPP DNLGFQKPVN  60
ISEAFPGSSN ASGSSSSKEE ANHYYPGKQI KRRKRHRRKH YEDQEPCMMR GVYFKNMKWQ  120
AAIKVDKKQI HLGTVGSQEE AARLYDRAAF MCGREPNFEL LEEEKRELSQ YNWDEFLEMT  180
RNAINNKKHQ KRLGAGRQKK PESQLQSSDG ERERSIHGSS VSDNGDADTS V
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008810643.11e-174ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_026666181.11e-174ethylene-responsive transcription factor-like protein At4g13040
SwissprotQ56XP92e-39ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A2H3Z9T71e-173A0A2H3Z9T7_PHODC; ethylene-responsive transcription factor-like protein At4g13040
STRINGXP_008810643.11e-173(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75163545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.11e-47ERF family protein