PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s65509180g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

GRAS

Protein Properties

Length: 218aa MW: 24414.2 Da PI: 6.4082

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s65509180g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	151.3	8.8e-47	2	216	142	373
GRAS 142 lRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklv 231 lRiT+++spe+ + el+ La A +l++pfef+v+ +l+++++++ r + +aVnl + + l s +++L+lv PDK_30s65509180g001 2 LRITAFVSPEAYHPLELNLACGTLAFWAGRLNIPFEFSVM---NLDNFDPSAVRNLVDAPIAVNLPVGSAHNL-------S--PTLLRLV 79 9************************************8...99999999999999*****9888887.......3..68* PP GRAS 232 kslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee 321 k+l Pkvvv v+ +d+++ +F ++fl+a++ +++l+ds++a + ++ e +++E ++++++i++ v ++++ +++ Wr+ + + PDK_30s65509180g001 80 KQLTPKVVVSVDLGCDRSEMPFSHHFLHAFQSCMVLLDSIDAAV-TDREVTTNIEWFIVQPWIESSVLGRHRA----ANKMLPWRMLFAS 164 *************************************997.778999*************99998....88899**** PP GRAS 322 aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 aGF p+++s+ +++qa++ll++v+++g++ve +++sl+l+W++r+LvsvSaW PDK_30s65509180g001 165 AGFVPLQFSSATESQADCLLQRVPVRGFHVETHQDSLFLCWQHRELVSVSAW 216 ************************************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	15.597	1	197	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.0E-44	2	216	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MLRITAFVSP EAYHPLELNL ACGTLAFWAG RLNIPFEFSV MNLDNFDPSA VRNLVDAPIA 60 VNLPVGSAHN LSPTLLRLVK QLTPKVVVSV DLGCDRSEMP FSHHFLHAFQ SCMVLLDSID 120 AAVTDREVTT NIEWFIVQPW IESSVLGRHR AANKMLPWRM LFASAGFVPL QFSSATESQA 180 DCLLQRVPVR GFHVETHQDS LFLCWQHREL VSVSAWGC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008796806.1	1e-156	scarecrow-like protein 6
TrEMBL	A0A2H3YCR2	1e-154	A0A2H3YCR2_PHODC; scarecrow-like protein 6
STRING	XP_008796806.1	1e-155	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2020	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45160.1	2e-53	GRAS family protein