PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s65509195g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GRAS
Protein Properties Length: 459aa    MW: 49827.9 Da    PI: 4.6447
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s65509195g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS151.48.7e-471432952149
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalklfse 86 
                           ++Ll+cA+ ++++d  la + L +++e as  gdp++R+a+yf+eAL +rl+  +   y++ p+s+ ++ +      ++ ++ +k+f++
  PDK_30s65509195g001 143 LQALLDCAR-IADSDPDLAAKSLDKIRESASDLGDPTERVAFYFAEALYSRLSAASGDPYRKDPSSPPPSATsysstPEDFTFCYKAFND 231
                          689*****9.8888***************************************95554454443333333333445578889999***** PP

                 GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgs 149
                          ++P+ kf+hltaNqaIlea+e+++++HiiDf+i qG+QW+aLlqaLa+Rp+g+p ++Ri g+ +
  PDK_30s65509195g001 232 ACPYSKFAHLTANQAILEATESASQIHIIDFGIVQGVQWAALLQALATRPAGKPaKIRISGIPA 295
                          **************************************************66555******976 PP
2GRAS44.52.6e-14386459303374
                 GRAS 303 aerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                          aer  ++e  e+W + ++++G+ pv++s++a++qa+lll +++ s  yr+ +   g l l W+drpL++v +Wr
  PDK_30s65509195g001 386 AERLRKMEGREEWTALMGRCGLCPVAVSNYAVSQANLLLWNYNySSKYRILDFpPGFLSLAWEDRPLLTVYSWR 459
                          78999**************************************9999**9865166666**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098527.564116459IPR005202Transcription factor GRAS
PfamPF035143.0E-44143295IPR005202Transcription factor GRAS
PfamPF035148.9E-12386459IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQVIQ QKQQQQQQRQ QQQQQQGIAT SVSPFSVNPQ PWGPNHHQPI  60
PDNFPFVIPD SADFHDPFAS DSGPGTVLGF HPSRVPVRTE ASPASTFDPP PPPQQKNDAG  120
TGAEIVRDPD VAGNPPSTSP PLLQALLDCA RIADSDPDLA AKSLDKIRES ASDLGDPTER  180
VAFYFAEALY SRLSAASGDP YRKDPSSPPP SATSYSSTPE DFTFCYKAFN DACPYSKFAH  240
LTANQAILEA TESASQIHII DFGIVQGVQW AALLQALATR PAGKPAKIRI SGIPALALGD  300
SPAASLPVLT PLPELTASTF RVEPGESVAV NFVLQLYTLL GDSTELVERY EASLNRSGFV  360
ARFGAAVACY AAVFESLEPE MDRGSAERLR KMEGREEWTA LMGRCGLCPV AVSNYAVSQA  420
NLLLWNYNYS SKYRILDFPP GFLSLAWEDR PLLTVYSWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1191394591375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (PubMed:27081181). {ECO:0000250|UniProtKB:A0A024B7I0, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:27081181}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008785667.10.0SCARECROW-LIKE protein 7-like
SwissprotQ53K161e-116SCL7_ORYSJ; SCARECROW-LIKE protein 7
TrEMBLA0A2H3XLP40.0A0A2H3XLP4_PHODC; SCARECROW-LIKE protein 7-like
STRINGXP_008785667.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85693748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-116GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li S, et al.
    Crystal Structure of the GRAS Domain of SCARECROW-LIKE7 in Oryza sativa.
    Plant Cell, 2016. 28(5): p. 1025-34
    [PMID:27081181]