PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s65509309g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NF-YA

Protein Properties

Length: 151aa MW: 15992.5 Da PI: 8.2376

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s65509309g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	42.5	2.1e-13	8	30	36	58
CBFB_NFYA 36 kpylheSRhkhAlrRpRgsgGrF 58 +pylheSRh+hAlrR+Rg+gGrF PDK_30s65509309g002 8 QPYLHESRHQHALRRARGCGGRF 30 89********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51152	18.579	1	33	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.0E-10	8	30	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MDVAFILQPY LHESRHQHAL RRARGCGGRF LNTKKADGNA ATANPENGAN TCASLPRQSA 60 SSSGSEALPS YCSGNPDSGS NMNEIKRPVV QGLCEARAFT NDNGGHQQQS GFQLSSFHSK 120 SGGRVEEGDC SGQQHGGILV NQPPNRAVTI Q

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008778471.1	1e-109	nuclear transcription factor Y subunit A-9-like
TrEMBL	A0A2H3X545	1e-107	A0A2H3X545_PHODC; nuclear transcription factor Y subunit A-9-like
STRING	XP_008778471.1	1e-108	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP27498	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	2e-13	nuclear factor Y, subunit A7