PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s65509337g004

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

Trihelix

Protein Properties

Length: 201aa MW: 22748.7 Da PI: 8.6149

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s65509337g004	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	55.6	1.4e-17	13	101	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + L++a++e+ +l+rg+l++ +We+v+ + +++ +s +qCk+k++nl+kryk + ++ +++ ++s++p+f+++e PDK_30s65509337g004 13 EWSDTAIGSLLDAYTERYVQLNRGNLRGRDWEDVATLVsdrcDKQKAGKSVEQCKNKIDNLKKRYKVECQRLSSG-GLAVSHWPWFKKME 101 5******************************97766665599999**********************98.78889******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.1E-21	11	103	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MSSSGDYRKD REEWSDTAIG SLLDAYTERY VQLNRGNLRG RDWEDVATLV SDRCDKQKAG 60 KSVEQCKNKI DNLKKRYKVE CQRLSSGGLA VSHWPWFKKM EQIVGSSSSL KALADEDTSG 120 AIGGSAVVTR QMKRWEDMLL ASSKTLSFMF EGGRWKSLFI QQNSHAVAIT VSCWKKETGN 180 LGRSIENDEE KEEIGKIFHI I

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008777884.1	5e-93	uncharacterized protein LOC103697738
TrEMBL	A0A2H3X3V2	1e-91	A0A2H3X3V2_PHODC; uncharacterized protein LOC103697738
STRING	XP_008777884.1	2e-92	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1935	34	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.2	2e-57	Trihelix family protein