PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s6550949g015
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family B3
Protein Properties Length: 392aa    MW: 42635.2 Da    PI: 6.6936
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s6550949g015genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.83.4e-17205294288
                         EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         +k+lt+sdv++ gr+vlpkk ae++   ++++ +++l++ d+    +W++k+++  +++s++y + + + +Fv+ +gL++gDf++++ ++ 
  PDK_30s6550949g015 205 QKELTNSDVGRIGRIVLPKKEAESNlpPLSERDGMMLQMDDLILpTTWKFKYRFwpNNRSRMY-IMETTGDFVRTHGLEAGDFFIIYKSS- 293
                         799************************88999999******5555*******99655555555.5559*****************99333. PP

                         S CS
                  B3  88 s 88 
                          
  PDK_30s6550949g015 294 A 294
                         4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-25197297IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.36E-19203295IPR015300DNA-binding pseudobarrel domain
CDDcd100171.25E-19204300No hitNo description
SMARTSM010193.5E-12204305IPR003340B3 DNA binding domain
PROSITE profilePS508639.686204306IPR003340B3 DNA binding domain
PfamPF023621.3E-13205295IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MATGGGAGVG SGSAGQPVTK LVMMPLFDSA EETASNGVEA TGGCDEMIAG QVEQESSKAL  60
QLPALQFQLG CHCLKASSNN LDSLFTSIFP MSTNALRANL MNYLLSYHGS LYDDLPHPFS  120
ASNLKVHNDA IKDPSNTSQM QMKSSSPNTP NKLYPESACQ CNPMAGPNVL SASTRGSLMN  180
FVDDGHLDVK ETMNHGLEEL KMVLQKELTN SDVGRIGRIV LPKKEAESNL PPLSERDGMM  240
LQMDDLILPT TWKFKYRFWP NNRSRMYIME TTGDFVRTHG LEAGDFFIIY KSSASGNYAV  300
ASKKGNRLPT SVDLLHCHTM NQCNMNEDGN SCLSRIGKVR GAKHQLCLEP SKSLGQGSHS  360
FLTVARNDSL RTGVLNDFDG HPAGPHFQNL PP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A6e-352003151115B3 domain-containing transcription factor FUS3
6j9b_D6e-352003151115B3 domain-containing transcription factor FUS3
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026664310.11e-177B3 domain-containing protein Os04g0676600-like
TrEMBLA0A3Q0IFF11e-176A0A3Q0IFF1_PHODC; B3 domain-containing protein Os04g0676600-like
STRINGXP_008802959.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113462831
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.13e-35B3 family protein