PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s6550950g011
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family SBP
Protein Properties Length: 277aa    MW: 30560.3 Da    PI: 9.7532
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s6550950g011genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP126.21.3e-39177253278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         CqvegC+ dl+ ak+yhr+h+vCe hs++p+vl++g+e rfCqqCsrfh+lsefD++krsCrrrL++hn+rrrk+q+
  PDK_30s6550950g011 177 CQVEGCNIDLTAAKDYHRKHRVCESHSRSPKVLLAGQECRFCQQCSRFHDLSEFDQKKRSCRRRLSDHNARRRKPQP 253
                         **************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-32170238IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.676174251IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.77E-37175256IPR004333Transcription factor, SBP-box
PfamPF031101.6E-31177250IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDWNAKATLQ WDWEHLTIFG GNESKLSGPA QQHEWKVEGA GGIGDATLYS SSRGACSGSE  60
LGNDSSRSSI SASMCSSSKA AIKVPEFNFE PVEGFPKNLS KSKELARGED TGTSPVAMAK  120
VGPGEPPIGL KLGKRTYFED IYAGNSIKNP SASSVMPSTG SVKRTRVSHQ SIRTTYCQVE  180
GCNIDLTAAK DYHRKHRVCE SHSRSPKVLL AGQECRFCQQ CSRFHDLSEF DQKKRSCRRR  240
LSDHNARRRK PQPKIISFNS SRLSSSFYGI LQPSFPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-271772501184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232249KKRSCRRRLSDHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008809089.10.0squamosa promoter-binding-like protein 12
SwissprotA2YGR56e-78SPL12_ORYSI; Squamosa promoter-binding-like protein 12
TrEMBLA0A2H3Z6E70.0A0A2H3Z6E7_PHODC; squamosa promoter-binding-like protein 12
STRINGXP_008809089.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36973776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.34e-62squamosa promoter binding protein-like 2