PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s6550951g017

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

WOX

Protein Properties

Length: 176aa MW: 20041.4 Da PI: 9.2722

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s6550951g017	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.8	5e-20	15	76	1	57
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++ R+++t+eq+++L +lF++ r+ps+++++ ++++l +++ ++V++WFqN++a+e++ PDK_30s6550951g017 15 KCGRWNPTAEQVKVLTDLFRSgLRTPSTDQIQTISSHLssfgKIESKNVFYWFQNHKARERH 76 568***************99************************************95 PP
2	Wus_type_Homeobox	110.7	7.9e-36	15	77	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++ RW+Pt+eQ+k+L++l++sGlrtP++++iq i+++L+++Gkie+kNVfyWFQN+kaRer++ PDK_30s6550951g017 15 KCGRWNPTAEQVKVLTDLFRSGLRTPSTDQIQTISSHLSSFGKIESKNVFYWFQNHKARERHH 77 578**********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.009	12	77	IPR001356	Homeobox domain
SMART	SM00389	7.0E-4	14	81	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.8E-11	15	80	IPR009057	Homeodomain-like
Pfam	PF00046	3.0E-17	16	76	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.8E-7	18	75	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0010078	Biological Process	maintenance of root meristem identity
GO:1902459	Biological Process	positive regulation of stem cell population maintenance
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MDEGDRFGTT RVGAKCGRWN PTAEQVKVLT DLFRSGLRTP STDQIQTISS HLSSFGKIES 60 KNVFYWFQNH KARERHHKKR RRGGAGGGGG EDRLVPVPEK RGATTRCLPS NDDSTKSEQE 120 VTWDERQREI ETLELFPLKS YDLAAEKRRS MRNECKETAF PDAGMDPPLD LRLSFL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in the specification and maintenance of the stem cells (QC cells) in the root apical meristem (RAM). {ECO:0000269\|PubMed:12904206}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008785588.1	1e-128	WUSCHEL-related homeobox 9-like
Swissprot	Q8W0F1	1e-59	WOX9_ORYSJ; WUSCHEL-related homeobox 9
TrEMBL	A0A2H3XLH4	1e-127	A0A2H3XLH4_PHODC; WUSCHEL-related homeobox 9-like
STRING	XP_008785588.1	1e-128	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9411	36	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11260.1	7e-36	WUSCHEL related homeobox 5

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Li S, et al. OsFIE2 plays an essential role in the regulation of rice vegetative and reproductive development. New Phytol., 2014. 201(1): p. 66-79 [PMID:24020752] Chu H, et al. A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice. J. Exp. Bot., 2013. 64(17): p. 5359-69 [PMID:24043854] Wang W, et al. Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice. PLoS Genet., 2014. 10(3): p. e1004154 [PMID:24625559] Coudert Y, et al. Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation. New Phytol., 2015. 206(1): p. 243-54 [PMID:25442012]