PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s65509559g006

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

MYB_related

Protein Properties

Length: 835aa MW: 92230.1 Da PI: 6.69

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s65509559g006	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.5	1.3e-07	49	91	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + +a +q G++ +++I +++ + q++++++ + PDK_30s65509559g006 49 AWTRQEEENFFNALRQVGKN-FEKITCRVQ-SKNKDQVRHYYYRL 91 6***************99.*****.*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.36E-10	42	96	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.9E-5	44	94	IPR009057	Homeodomain-like
PROSITE profile	PS51293	12.694	45	96	IPR017884	SANT domain
SMART	SM00717	5.1E-5	46	94	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-5	49	91	IPR001005	SANT/Myb domain
CDD	cd00167	3.14E-5	49	92	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 835 aa Download sequence Send to blast
MGSQADMELR TPLAENVLMK EADFGFPSSS PMAVVTQKPA KKPTRQWAAW TRQEEENFFN 60 ALRQVGKNFE KITCRVQSKN KDQVRHYYYR LVRRMNKLLG PGFYLDAKNS KDTNAAMLRW 120 WSLLEKYSCT ASKLHLKPRR FKIFVEALEN QLLKDRNKTK RRRPHGDIYS PTPSTQVVSR 180 VPGNDARSLK LLTVDAQTTN KVGATKGASF KRNVNANMNF SKGDSSMKTA KQKRRTGVVA 240 SAEYRSWEEA AMAGVSLVAD AAEQLERAAN DRNGFSDGRT CNMLPKEMYN CNNEICSHQI 300 ETIMQPRVKL KLQLFPIDEG TRRALEKDAH NPHLELTLSA RKKISSVLDH LNRKWGNSSI 360 ASGELMLFPY DVQLLELASC RRWAITDTAA SAADVYATIG SPAIFRLRYG WLSSVELRSG 420 IVHVPSTPIQ SENCMLSEGI LNGNNIMSGP DAKCINTDAP PIREFSGQPQ QLSEDQQTSV 480 IALATSNIDP PEPMNEVNCV KPMHELPENS GKEPFSRSGE ETKDLSSGPQ QEDEGNAGMK 540 CVTLSAGEWA DSLTNVSVGD LLSEASKAAK DSCLDSPAGA SASCLQQIHF SCDSFDAAIA 600 AHISGHQLLP PTTQAFQASI WNAEETCDEF SFPAMKRDGS NPSTNSSIGA SREITYPSSL 660 GFQGYLKELA ESRPADDPSN EYVTAEPESD KDSSFNDRDN PQKDPCLQDI YWVFSSLLNI 720 DISLRFLGPL DLDMPSPRYH GQDLVFGDSL SGLSRLIASS LDAFQNCSFF SLEKESSATG 780 ACGASFLLDD KVVGRKCILI GLGLAISRTK GFTFLCMNPP LDFPLLALRS MQMDK

Sequence ? help Back to Top

Protein Sequence Length: 835 aa Download sequence Send to blast

MGSQADMELR TPLAENVLMK EADFGFPSSS PMAVVTQKPA KKPTRQWAAW TRQEEENFFN  60
ALRQVGKNFE KITCRVQSKN KDQVRHYYYR LVRRMNKLLG PGFYLDAKNS KDTNAAMLRW  120
WSLLEKYSCT ASKLHLKPRR FKIFVEALEN QLLKDRNKTK RRRPHGDIYS PTPSTQVVSR  180
VPGNDARSLK LLTVDAQTTN KVGATKGASF KRNVNANMNF SKGDSSMKTA KQKRRTGVVA  240
SAEYRSWEEA AMAGVSLVAD AAEQLERAAN DRNGFSDGRT CNMLPKEMYN CNNEICSHQI  300
ETIMQPRVKL KLQLFPIDEG TRRALEKDAH NPHLELTLSA RKKISSVLDH LNRKWGNSSI  360
ASGELMLFPY DVQLLELASC RRWAITDTAA SAADVYATIG SPAIFRLRYG WLSSVELRSG  420
IVHVPSTPIQ SENCMLSEGI LNGNNIMSGP DAKCINTDAP PIREFSGQPQ QLSEDQQTSV  480
IALATSNIDP PEPMNEVNCV KPMHELPENS GKEPFSRSGE ETKDLSSGPQ QEDEGNAGMK  540
CVTLSAGEWA DSLTNVSVGD LLSEASKAAK DSCLDSPAGA SASCLQQIHF SCDSFDAAIA  600
AHISGHQLLP PTTQAFQASI WNAEETCDEF SFPAMKRDGS NPSTNSSIGA SREITYPSSL  660
GFQGYLKELA ESRPADDPSN EYVTAEPESD KDSSFNDRDN PQKDPCLQDI YWVFSSLLNI  720
DISLRFLGPL DLDMPSPRYH GQDLVFGDSL SGLSRLIASS LDAFQNCSFF SLEKESSATG  780
ACGASFLLDD KVVGRKCILI GLGLAISRTK GFTFLCMNPP LDFPLLALRS MQMDK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008791201.1	0.0	TSL-kinase interacting protein 1 isoform X2
TrEMBL	A0A2H3Y063	0.0	A0A2H3Y063_PHODC; TSL-kinase interacting protein 1 isoform X2
STRING	XP_008791198.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5478	36	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36960.3	0.0	TSL-kinase interacting protein 1