PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s65509560g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 98aa    MW: 11209.8 Da    PI: 10.0719
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s65509560g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.2e-171663148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT eEd ll  +v+++G + W+ ++++ g++R++k+c++rw++yl
  PDK_30s65509560g003 16 KGAWTVEEDALLRGCVEKYGAKEWRHVPQRAGLNRCRKSCRLRWLNYL 63
                         79*********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-211065IPR009057Homeodomain-like
PROSITE profilePS5129425.441167IPR017930Myb domain
SMARTSM007178.4E-131565IPR001005SANT/Myb domain
PfamPF002492.9E-161663IPR001005SANT/Myb domain
SuperFamilySSF466892.54E-211791IPR009057Homeodomain-like
CDDcd001673.35E-101863No hitNo description
Gene3DG3DSA:1.10.10.601.1E-56690IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MSFDSTNGTK QPGIRKGAWT VEEDALLRGC VEKYGAKEWR HVPQRAGLNR CRKSCRLRWL  60
NYLSPGINRG SFGEDEADLI VRLHKLLGNR QVTKEEPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-141290380B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026657506.16e-58transcription factor MYB114-like
SwissprotQ9FNV91e-34MY113_ARATH; Transcription factor MYB113
TrEMBLA0A3Q0HSF81e-56A0A3Q0HSF8_PHODC; transcription factor MYB114-like
STRINGXP_008779039.11e-59(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.14e-37myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]