PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s6550957g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 150aa    MW: 17351 Da    PI: 8.8404
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s6550957g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-0585103523
                         TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                          Cgk F+  s L++H  tH
  PDK_30s6550957g001  85 GCGKAFKYASKLQKHEDTH 103
                         6**************9998 PP
2zf-C2H212.20.00057112136223
                         EET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                         +C+   C k+F++ + Lk Hi++ H
  PDK_30s6550957g001 112 VCSesGCMKTFTNAECLKAHIQSwH 136
                         68888999*************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.66E-63574No hitNo description
Gene3DG3DSA:3.30.160.608.6E-73674IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.2245283IPR007087Zinc finger, C2H2
SMARTSM003550.325278IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805478IPR007087Zinc finger, C2H2
SMARTSM003556380103IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.72580103IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.7E-583103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene3DG3DSA:3.30.160.602.8E-5111132IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.2111136IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280113136IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
FVAYVCSLIP MTNRCKVQDV LKGAQTDQVS EEKERSNLNQ HIKAIHQELR PFACRIPGCG  60
KRFPYRHVRD KHEKSGVHVY VQEAGCGKAF KYASKLQKHE DTHVKLDCVE IVCSESGCMK  120
TFTNAECLKA HIQSWHQYVQ CEKYRFKAYV
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008805822.13e-44transcription factor IIIA-like
SwissprotQ84MZ47e-23TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2H3YYI56e-43A0A2H3YYI5_PHODC; transcription factor IIIA-like
STRINGXP_008805822.11e-43(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.11e-25transcription factor IIIA