PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s65509598g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 306aa    MW: 33683.8 Da    PI: 6.8553
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s65509598g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.1e-181461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd +lv +++++G+g+W++++++ g+ R+ k+c++rw +yl
  PDK_30s65509598g001 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPAKTGLLRCSKSCRLRWTNYL 61
                         79******************************99************97 PP
2Myb_DNA-binding50.83.8e-1667112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T +E++l++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  PDK_30s65509598g001  67 RGNFTDQEEKLIIHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 112
                          89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.789961IPR017930Myb domain
SuperFamilySSF466893.35E-3011108IPR009057Homeodomain-like
SMARTSM007171.1E-141363IPR001005SANT/Myb domain
PfamPF002491.5E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-241568IPR009057Homeodomain-like
CDDcd001671.05E-111661No hitNo description
PROSITE profilePS5129424.88762116IPR017930Myb domain
SMARTSM007172.5E-1666114IPR001005SANT/Myb domain
PfamPF002493.8E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-2569117IPR009057Homeodomain-like
CDDcd001672.29E-1169111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGRPPCCDKV GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PAKTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TDQEEKLIIH LQALLGNRWA AIASYLPERT DNDIKNYWNT HLKKKLKKLE  120
TGGDGLTSSG VSSHHSISKG QWERRLQTDI NHAKQALCEA LSLEKHSSLS DSKAASSGYN  180
LSTRPATYAS STENISRLLE AWTRKSTRPG DCRANSGSTQ TDSACSQGTQ SATNCILSPE  240
PLESLFGPDS STPEASETSL LGEERKLLLE AQEPLSLIES WLLDESVGQG QLSLLDMALD  300
DASELF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-26141164105MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-26141164105C-Myb DNA-Binding Domain
1msf_C2e-26141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00395DAPTransfer from AT3G47600Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008801687.10.0myb-related protein 306-like
SwissprotP813921e-115MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A2H3YPV30.0A0A2H3YPV3_PHODC; myb-related protein 306-like
STRINGXP_008801687.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.13e-97myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]