PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s6550959g005

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

WRKY

Protein Properties

Length: 211aa MW: 23178.3 Da PI: 7.6333

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s6550959g005	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.8	2.9e-30	111	169	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K+vk+s++pr+YYrC+ +gC vkk+ver++ed ++v++tYeg Hnh PDK_30s6550959g005 111 LDDGFKWRKYGRKSVKSSPNPRNYYRCSKEGCAVKKRVERDSEDSRYVITTYEGVHNHA 169 59********************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.6E-31	100	171	IPR003657	WRKY domain
SuperFamily	SSF118290	8.11E-27	103	171	IPR003657	WRKY domain
PROSITE profile	PS50811	31.502	106	171	IPR003657	WRKY domain
SMART	SM00774	2.4E-33	111	170	IPR003657	WRKY domain
Pfam	PF03106	9.9E-24	112	168	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MAAPLGLTDM SYDSPFFLVD GPSKVPGGGF IPAVVSDDCM LGVSHCVVPD EGLLFEEYSS 60 VAGDPTKLQV ASNCVLNAPA SRMAMNGWNI MKKVDTGCRI GFRTKSQVDI LDDGFKWRKY 120 GRKSVKSSPN PRNYYRCSKE GCAVKKRVER DSEDSRYVIT TYEGVHNHAS PGTLCCNFNP 180 RQAKTSAWVS YGQLPFLSEQ DAGCSLFFSE L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	7e-26	99	171	2	74	WRKY transcription factor 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008808912.1	1e-158	probable WRKY transcription factor 50
TrEMBL	A0A2H3Z6K6	1e-157	A0A2H3Z6K6_PHODC; probable WRKY transcription factor 50
STRING	XP_008808912.1	1e-157	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP441	37	206

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	4e-39	WRKY DNA-binding protein 51