PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s65509619g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 274aa    MW: 30078.8 Da    PI: 5.8262
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s65509619g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.44e-092951124
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpse 24
                         ++y+GVr++  +g+WvAeIr+p++
  PDK_30s65509619g002 29 CDYRGVRQRT-WGKWVAEIREPKK 51
                         68*****999.**********943 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.3E-42953IPR001471AP2/ERF domain
SMARTSM003803.6E-43064IPR001471AP2/ERF domain
PROSITE profilePS510329.6113057IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-103153IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-53152IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MDNARKFPPL RPWKKGPARG KGGPQNASCD YRGVRQRTWG KWVAEIREPK KHAYLNLPHL  60
RSSNISSSTT IGKPPHRFKW FPSKNFTSMI PSCGLLNLNA QHNVHVIHQK LQEFQNSRPS  120
SSSSLSSSSS SSCPGSFRSL EPAPPVAAME KTHLESFDMA VEGASSMPME MAPIPGDEKP  180
QIDLKEFLQQ LGVIKEEESK PEADEGAESS VMAEPTQGGS GVASEMVGFG EGDFNWDTLV  240
EMRALEDHSV VGDGGLQVDD LHEELSLPIS LWDL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008809802.11e-180dehydration-responsive element-binding protein 2F
TrEMBLA0A2H3Z8041e-179A0A2H3Z804_PHODC; dehydration-responsive element-binding protein 2F
STRINGXP_008809802.11e-179(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95752939
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.17e-52ERF family protein