PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s6550963g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 209aa    MW: 23025.6 Da    PI: 4.3158
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s6550963g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.6e-071847130
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                        +g+WT+ Ed +l+ +++++G ++W+  ++ 
  PDK_30s6550963g003 18 KGPWTPVEDAKLIGYIQKHGHENWRGLPKQ 47
                        79**********************977765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-11947IPR009057Homeodomain-like
SuperFamilySSF466892.65E-71247IPR009057Homeodomain-like
PROSITE profilePS500906.2721347IPR017877Myb-like domain
PfamPF002491.1E-51846IPR001005SANT/Myb domain
CDDcd001674.95E-42042No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MGQRRGRAPC CEKVGLKKGP WTPVEDAKLI GYIQKHGHEN WRGLPKQADQ CMLIEGLSDL  60
SADDSRDSSG ISSLESHITS CDFQEKSVQQ PLQDDGKNHQ DYLIRVPEIS IDAEIWSITD  120
DVGPVVEGGA HTIPITSEGD STREVDDKGW LAYLEKELDL EGTMDLNAVE QLCPTGYLGG  180
VLEDFDPVSC YFQKRHCPPP SDLASQVGQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008793603.11e-111transcription factor MYB13-like
TrEMBLA0A2H3Y5941e-110A0A2H3Y594_PHODC; transcription factor MYB13-like
STRINGXP_008793603.11e-111(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-18myb domain protein 15