PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s6550967g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family SBP
Protein Properties Length: 209aa    MW: 22249.8 Da    PI: 10.2749
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s6550967g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP507.7e-163394177
                        EE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                 SBP 41 rfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77
                         +C    rfh l efD++krsCr+rLa+hn+rrrk+q
  PDK_30s6550967g003  3 WWCIYTCRFHVLAEFDQGKRSCRKRLADHNRRRRKSQ 39
                        5899999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114115.144138IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.16E-12339IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.102.2E-5425IPR004333Transcription factor, SBP-box
PfamPF031109.4E-9537IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MKWWCIYTCR FHVLAEFDQG KRSCRKRLAD HNRRRRKSQD LTTATITATH ANNSTTNTTS  60
GVTNNSAANP GRILFNTSSS TINNKSISSN NNCSNHSATT AAMAFAACKP ETESSVTHAS  120
PPKAPPSLPL PPPAALPRMA LGLRCGSGGI MTVPAAATGL SASSSTGTSP PSVAFQLAHL  180
GEFRGHENRF PSWDDSEDGS SIRGLYQSK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008802805.14e-87squamosa promoter-binding-like protein 8
TrEMBLA0A2H3YRN59e-86A0A2H3YRN5_PHODC; squamosa promoter-binding-like protein 8
STRINGXP_008802805.11e-86(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1946357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.11e-11squamosa promoter binding protein-like 8