PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s65509686g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family TALE
Protein Properties Length: 937aa    MW: 107095 Da    PI: 9.2259
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s65509686g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.61e-088919232355
                          SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
             Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                          +yp++ e+  LA+++gL+++q+++WF N+R ++
  PDK_30s65509686g001 891 PYPTEGEKMALAESTGLDQKQISNWFINQRKRH 923
                          8*****************************885 PP
2ELK29.12.2e-10843864122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          +LK+ Ll KY+gyL+sLkqEFs
  PDK_30s65509686g001 843 DLKDNLLCKYGGYLSSLKQEFS 864
                          69*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142231.1E-2116134No hitNo description
PfamPF077272.2E-79415627IPR013103Reverse transcriptase, RNA-dependent DNA polymerase
SuperFamilySSF566725.11E-32416778No hitNo description
CDDcd092722.38E-62671782No hitNo description
PfamPF037897.0E-8843864IPR005539ELK domain
SMARTSM011889.2E-6843864IPR005539ELK domain
PROSITE profilePS5121310.196843863IPR005539ELK domain
PROSITE profilePS5007112.714863926IPR001356Homeobox domain
SuperFamilySSF466898.13E-18864933IPR009057Homeodomain-like
SMARTSM003892.8E-12865930IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-24868927IPR009057Homeodomain-like
CDDcd000861.29E-9875927No hitNo description
PfamPF059204.2E-17883922IPR008422Homeobox KN domain
PROSITE patternPS000270901924IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 937 aa     Download sequence    Send to blast
MIFLTDPHLQ PQFLASALHS TISPSILPFV INLAHTHQIW SVLERRLNSV TRSHVIQLKN  60
ELHSIKKNEK TMQQYLNHVR NIVTALASAG SKPDTEDILL HILNGLPSSY DSFATAVRVR  120
SSSIDLDELY ASLAKALLAN PPELSRTSDW VVDSGATSHM TPDPSVLQNS TPYQGHDHVS  180
LGNNSTIPIH HTGTGILQTP SHNLQLSQVL HTPGLPGSFR FNINQMSCLH LYTLRAWLKI  240
NSQPPLKFFV QTVVLYLLLY SLSTVHHLLF YTTNLLMSFY MGILWTILYF GSLGVDAFHG  300
LSHISKTNWL RVPFLVSFLG TLLNTRAIAV TTLQQVVFSY PGTSSLMSTF FLFLRPVWHP  360
MITRSQTGSL KPKEIFFLNT NTSSLVEPTC YSAAVIDYNW RQAMSMEFNA LLDQRTWRLV  420
PRPTDQNVLG CRWTYKIKKH SDGSIARYKA RLVAKGFNQE YGVDYTETFS PVAKFQTIRV  480
LLVVALTSKW PIRQLDISNA FLHGTLNETV FMEQPMGFVD SSCPQHVCLL QKALYGLKQA  540
PCQWFSTFSS FLLEQGFTIS KADPSLFLFD CKSIHIYILI YVDDILLTGN NRGAIADLLL  600
RLQLRFKVKD LGTLSQFLGV QSVFSSQVNY LYQFMHKPLN SHYQLLKRVL RYVKGTLNFS  660
LHYRPSSLVL TVFCDSDWAG DPIDRKSTIG FCVFLGDNPI SWYPKKQPIV ARSSTEAEYR  720
ALAITSTELI WLRRLLHEFH IPTTTPTELL CDNVSALALA TNPVFHARTK HIEIDYHFVR  780
EKALFIVSQK LYTILMTWSL FRNDGESRNH QVIPNETCGS SEEEFSGREI DAQESHFKRE  840
DRDLKDNLLC KYGGYLSSLK QEFSKRKKKI KLPKDARLKL LDWWEAHYGW PYPTEGEKMA  900
LAESTGLDQK QISNWFINQR KRHWKPSENM QFAVMDD
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.12e-45KNOTTED1-like homeobox gene 6