PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s6550971g007

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

MYB_related

Protein Properties

Length: 204aa MW: 22412.1 Da PI: 6.626

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s6550971g007	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.8	1.6e-15	6	45	6	47
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +eEd +++ a++ +G++ W++Iar + gRt++ +k++w++ PDK_30s6550971g007 6 EEEDRIIIAAHAIHGNK-WASIARLLE-GRTDNAIKNHWNST 45 7**************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	22.658	1	50	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.4E-18	6	47	IPR009057	Homeodomain-like
CDD	cd00167	4.01E-12	6	46	No hit	No description
SMART	SM00717	2.3E-9	6	48	IPR001005	SANT/Myb domain
Pfam	PF00249	7.0E-13	6	45	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.64E-12	6	50	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MLWDVEEEDR IIIAAHAIHG NKWASIARLL EGRTDNAIKN HWNSTLRRRC FQVEQYKAAT 60 CDALQDASAE KAKGSSEESP SIGDVNSFKS LEGRDVNSKE NMSETSEDIG NVRDDTSEVK 120 DPPYLCRPVA RVSAFHPYNH VSGQSCGSLL SRPVQMHGLL PQAFQTGAGI SKLLDGKARG 180 AIVRGESLKN PLYAHEKSID LAIP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mbj_A	2e-16	5	50	7	52	MYB PROTO-ONCOGENE PROTEIN
1mbk_A	2e-16	5	50	7	52	MYB PROTO-ONCOGENE PROTEIN
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Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid. {ECO:0000269\|PubMed:16463103}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026663641.1	1e-122	transcription factor MYB1-like
Swissprot	Q42575	4e-27	MYB1_ARATH; Transcription factor MYB1
TrEMBL	A0A3Q0I9F9	1e-121	A0A3Q0I9F9_PHODC; transcription factor MYB1-like
STRING	XP_008801382.1	1e-122	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8990	36	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	2e-26	myb domain protein 1

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590] Verma N,Burma PK Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum. Plant J., 2017. 92(3): p. 481-494 [PMID:28849604]