PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s6550971g008
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 164aa    MW: 16864 Da    PI: 8.3331
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s6550971g008genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.47.7e-1981126147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +g+W++eEd +l ++v ++G ++W++Iar ++ gR++k+c++rw + 
  PDK_30s6550971g008  81 KGPWSPEEDAILSNLVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 126
                         79******************************.***********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.97476131IPR017930Myb domain
SuperFamilySSF466895.73E-1878137IPR009057Homeodomain-like
SMARTSM007171.0E-1580129IPR001005SANT/Myb domain
PfamPF002496.4E-1881126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-2382137IPR009057Homeodomain-like
CDDcd001673.08E-1683125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MERDPETAAD SDAHPPSSPP PSSSPPPPSP PPAPTAPVVE SATKSRAADG GANDPGAAAA  60
EGSACGGGGG GGAVPAEDRV KGPWSPEEDA ILSNLVSKFG ARNWSLIARG IPGRSGKSCR  120
LRWCNQLDPY VKRKPFTGTI YHLFLPFICS RIIPKGIPVS FLGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-1778137463B-MYB
Functional Description ? help Back to Top
Source Description
UniProtRequired for male gametophyte (pollen) development. {ECO:0000269|PubMed:22101548}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269|PubMed:15258262}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008780287.11e-113transcription factor MYB1-like
SwissprotO041926e-27MYB25_ARATH; Transcription factor MYB25
TrEMBLA0A2H3X9601e-112A0A2H3X960_PHODC; transcription factor MYB1-like
STRINGXP_008780287.11e-113(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4078322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.12e-29myb domain protein 109
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]