PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s65509720g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WRKY
Protein Properties Length: 384aa    MW: 43264.3 Da    PI: 4.8163
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s65509720g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.8e-31206264259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r++ed +++++tYeg+Hnh+
  PDK_30s65509720g004 206 NDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCREDMSILVTTYEGTHNHP 264
                          8***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-32195266IPR003657WRKY domain
PROSITE profilePS5081129.953200266IPR003657WRKY domain
SuperFamilySSF1182901.03E-27202266IPR003657WRKY domain
SMARTSM007743.6E-38205265IPR003657WRKY domain
PfamPF031064.5E-27206264IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MQIDLSLKIE DGEREGDEER EQEEEAVEGE ELVADEELEA NAKKEESLKD EEDQTEEKTM  60
GGNLVTDELC ILKNEMDHMK EENKFLRMVV DRTMKDYYDL QMKFAAIQQQ DLPKEHRVFL  120
SLGGEGSQVL KRTCECVEDK ERIKPFLAHQ GSEISERKDL ELSLRLQNFV DPHGREEPSQ  180
EKGKGLRRWT PVDTRLQTDE PAGILNDGCQ WRKYGQKVAK GNPCPRAYYR CTVAPGCPVR  240
KQVQRCREDM SILVTTYEGT HNHPLPVGAT AMASATTAAA TFMLPSGTSS SSSVSDSISN  300
QMPLSYLSPY LVNPSYHSST IDSFANFLSS SSFLDLIGNN NLGQQHLSET PHHKPNLKYP  360
WSATPCPNES SSVGSFLREQ LKRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-23196266877Probable WRKY transcription factor 4
2lex_A9e-23196266877Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008778211.20.0probable WRKY transcription factor 9
TrEMBLA0A2H3X4I70.0A0A2H3X4I7_PHODC; probable WRKY transcription factor 9
STRINGXP_008778211.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80223446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.12e-49WRKY DNA-binding protein 9