PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s65509724g007

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

WRKY

Protein Properties

Length: 327aa MW: 36540.4 Da PI: 10.3398

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s65509724g007	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.8	8.4e-32	261	318	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++++tYegeHnh+ PDK_30s65509724g007 261 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHNHT 318 9**********************9988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	9.1E-19	213	257	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	5.3E-34	247	318	IPR003657	WRKY domain
PROSITE profile	PS50811	29.998	254	317	IPR003657	WRKY domain
SuperFamily	SSF118290	3.27E-27	257	318	IPR003657	WRKY domain
SMART	SM00774	6.9E-39	259	319	IPR003657	WRKY domain
Pfam	PF03106	1.7E-27	261	317	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MEKVEEANRA AVESCHRVLS LLSQSQDQVQ YSNLVAEAGE AVSRFKRVAS MLSNGVGHAR 60 VRIVKRVQPS FNHKAFLDHS AVSKMDPSPK PLQFLPRSLL DTSAPELDHS AKNPEQVTQM 120 TFLENAGLDL DSSSSRSTLQ LAPQGPSTAV HFQFLRQQQS NQRFQLQQQI KFQADMFRRS 180 NSGMNLKFDS SSCTPTMSST RSFLSSLSMD GSRRCSGRGE DGSGKCATTG RCHCSKRRKL 240 RVKRSIKVPA ISNKLADIPP DEYSWRKYGQ KPIKGSPHPR GYYKCSSMRG CPARKHVERC 300 LEDPSMLIVT YEGEHNHTRL LTQSAHA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	7e-21	255	317	10	71	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008805954.1	0.0	protein WRKY1-like isoform X1
Swissprot	Q9SR07	2e-97	WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBL	A0A2H3YYT4	0.0	A0A2H3YYT4_PHODC; protein WRKY1-like isoform X1
STRING	XP_008805954.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2859	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04670.1	1e-83	WRKY DNA-binding protein 39

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]