PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s6550972g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GRAS
Protein Properties Length: 561aa    MW: 63324.6 Da    PI: 5.9869
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s6550972g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS427.21.3e-1301925602373
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                         ++lL++cAea+s+++ ++ + l+++ ++ +s +g p+qRl ay++e+L ar  +s++++y++l ++e +   s+e l++++++++++P++k
  PDK_30s6550972g001 192 KQLLISCAEALSENKINEFEMLVQEARDYVSITGGPIQRLGAYMLEGLVARHESSGTNIYRTLGCREPE---SKELLSYMRILYDICPYFK 279
                         689*****************************************************************9...9****************** PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
                         f++++aN aI ea+ +e+r+HiiDf+isqG+QW++L+qaLa+Rp+gpp++RiTg+++p s   + + l+ +g+ L+++ +++++p+efn l
  PDK_30s6550972g001 280 FGYMAANGAIAEALRHEDRIHIIDFQISQGTQWITLIQALAARPAGPPHVRITGIDDPVSAyaRGDGLQLVGKMLSDMSKNFNIPLEFNGL 370
                         **********************************************************999999**************************5 PP

                GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                               +++ e+L+++pgEalaVn+ lqlh+++desv+++++rd +L++vk+lsPkv ++veqe+++n+++Fl rfle+l+yysa+f+s++
  PDK_30s6550972g001 371 -PVYGPQVTREMLDIRPGEALAVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESNTNTTPFLMRFLETLDYYSAMFESID 460
                         .778999************************************************************************************ PP

                GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                         ++lpr+++eri vE+++l+++ivn++aceg+er+erhe l+kWr+rl++aGFkp+pls+++++ +k+ll  ++ d y++ e++g+++lgWk
  PDK_30s6550972g001 461 VTLPRDNKERIHVEQHCLAKDIVNIIACEGKERVERHELLGKWRSRLTMAGFKPYPLSSYVNSVIKTLLGYYS-DKYTLVEKDGAMLLGWK 550
                         *********************************************************************9999.55*************** PP

                GRAS 364 drpLvsvSaW 373
                         +r+L+s+SaW
  PDK_30s6550972g001 551 NRNLISASAW 560
                         ********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.724165542IPR005202Transcription factor GRAS
PfamPF035144.6E-128192560IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MDSHQLFKYE FPSPITPAYT EWALGSIKFG TGNSPNSPLS SQFESVQSNS QEQHSSTESI  60
SGVSPSQYSP LETGSSFRQT HIHLAESVQV PSNSSYAVSS QSMRHALQEI ETVLMAPDTD  120
EATTSTNLES DENKLLQLTK QRSRTWRHES CMEPPAVVQP QYISGRYPKP NHEVRPEKRL  180
REMREFPESD VKQLLISCAE ALSENKINEF EMLVQEARDY VSITGGPIQR LGAYMLEGLV  240
ARHESSGTNI YRTLGCREPE SKELLSYMRI LYDICPYFKF GYMAANGAIA EALRHEDRIH  300
IIDFQISQGT QWITLIQALA ARPAGPPHVR ITGIDDPVSA YARGDGLQLV GKMLSDMSKN  360
FNIPLEFNGL PVYGPQVTRE MLDIRPGEAL AVNFTLQLHH TPDESVDVNN PRDGLLRMVK  420
GLSPKVTTLV EQESNTNTTP FLMRFLETLD YYSAMFESID VTLPRDNKER IHVEQHCLAK  480
DIVNIIACEG KERVERHELL GKWRSRLTMA GFKPYPLSSY VNSVIKTLLG YYSDKYTLVE  540
KDGAMLLGWK NRNLISASAW Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A9e-6819856025377Protein SCARECROW
5b3h_D9e-6819856025377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008776123.10.0chitin-inducible gibberellin-responsive protein 1-like
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A2H3WZP80.0A0A2H3WZP8_PHODC; chitin-inducible gibberellin-responsive protein 1-like
STRINGXP_008776123.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106313643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]