PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s6550973g003

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

G2-like

Protein Properties

Length: 387aa MW: 43288.7 Da PI: 8.2469

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s6550973g003	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.3	8.4e-34	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLHerFveav+qLGG++kAtPkti++lm+++gLtl+h+kSHLQkYRl PDK_30s6550973g003 45 KPRLKWTPELHERFVEAVHQLGGADKATPKTIMRLMGIPGLTLYHLKSHLQKYRL 99 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.097	42	102	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-32	43	100	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.13E-17	44	100	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.6E-24	45	100	IPR006447	Myb domain, plants
Pfam	PF00249	6.1E-11	47	98	IPR001005	SANT/Myb domain
Pfam	PF14379	2.3E-10	134	162	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MYHHHLEGHS NLLASRTTFP PKKHLFLQGG SVPGESGLVL STDAKPRLKW TPELHERFVE 60 AVHQLGGADK ATPKTIMRLM GIPGLTLYHL KSHLQKYRLS KNLQSQANTG TTKNDKQVRD 120 RKYSRMLLIN ENLQLIVQRH LQLRIEAQGQ YLQSVLEKAQ ETLGKQNLGS TGLEAAKVQL 180 SELVSKVSHE CLNTAFPGLE EISGLHPLQA HAAQFTDCSV DSCLTSCEGS QKEQETNYVG 240 VGLSTYPGNS PLCLQQFRAD TELERAQPAW HADFNAQKTF SPFIVRDSEG TVFPAQRGSR 300 TLSINMKAQR EKVDSSTDSE ARRKERDSKD TFLEASRKRP AVLQERGKEP NEFGLSSMTT 360 QLDLNAHEEN DGLPNSKQFD LNGFSWS

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MYHHHLEGHS NLLASRTTFP PKKHLFLQGG SVPGESGLVL STDAKPRLKW TPELHERFVE  60
AVHQLGGADK ATPKTIMRLM GIPGLTLYHL KSHLQKYRLS KNLQSQANTG TTKNDKQVRD  120
RKYSRMLLIN ENLQLIVQRH LQLRIEAQGQ YLQSVLEKAQ ETLGKQNLGS TGLEAAKVQL  180
SELVSKVSHE CLNTAFPGLE EISGLHPLQA HAAQFTDCSV DSCLTSCEGS QKEQETNYVG  240
VGLSTYPGNS PLCLQQFRAD TELERAQPAW HADFNAQKTF SPFIVRDSEG TVFPAQRGSR  300
TLSINMKAQR EKVDSSTDSE ARRKERDSKD TFLEASRKRP AVLQERGKEP NEFGLSSMTT  360
QLDLNAHEEN DGLPNSKQFD LNGFSWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-20	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-20	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	5e-20	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-20	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-20	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-20	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-20	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-20	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-20	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-20	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-20	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-20	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008781221.2	0.0	myb-related protein 2-like isoform X2
TrEMBL	A0A2H3XBA4	0.0	A0A2H3XBA4_PHODC; myb-related protein 2-like isoform X2
STRING	XP_008793331.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3574	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.4	1e-101	myb-related protein 1