PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s6550994g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 207aa    MW: 23029.1 Da    PI: 9.4464
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s6550994g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.51.3e-123781147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  PDK_30s6550994g001 37 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 81
                        789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-163187IPR009057Homeodomain-like
PROSITE profilePS5129414.183286IPR017930Myb domain
TIGRFAMsTIGR015577.5E-193584IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.2E-63587IPR009057Homeodomain-like
SMARTSM007176.5E-103684IPR001005SANT/Myb domain
PfamPF002492.4E-103781IPR001005SANT/Myb domain
CDDcd001675.72E-83982No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MRVEREIYQK GALFVMDMAE IGCRKKIRKP YTITKSRESW TEPEHDKFLE ALQLFDRDWK  60
KIEAFVGSKT VIQIRSHAQK YFLKVQKNGT SEHVPPPRPK RKAAQPYPQK ASKNASLQTS  120
SMLEPGYALT ADTSSMLRNS TTSATVSSWV HSSVQPVSAP HAPKDDVGPT GAVVANNCSC  180
SSTESPSITW ATCETTDQEN HVRSLCG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026662433.11e-132protein REVEILLE 5-like isoform X2
RefseqXP_026662435.11e-132protein REVEILLE 6-like isoform X5
SwissprotQ8H0W31e-63RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A3Q0I6151e-131A0A3Q0I615_PHODC; protein REVEILLE 5-like isoform X2
TrEMBLA0A3Q0IA491e-131A0A3Q0IA49_PHODC; protein REVEILLE 6-like isoform X5
STRINGXP_008796928.11e-131(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.24e-53MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]